AMCG00005854 (LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969)


Basic Information

Item Value
gene id AMCG00005854
gene name LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11205387 ~ 11206589 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005854
ATGTGTGACCCACGGGACAGCGAGAGCCTGCGGGGAGGAGGCGTGTCCTCGTCGTCAGTGCTGGAGAGTAGTGGGGGGGAGGAGGAACTGGGGGGGGCCCTGCTGTGCATGCCAGGGCCCTCGCTGCTCTCACGCCGGCTGCTGGGTCTGTGCGGCAGCAAGAGGCAGCTCTCACTGGGCACGCGGCGCAAGCGGGAGTTCACGCCGGACGAGAAGAAGGACGCCAGCTACTGGGACAAGCGGCGCAAGAACAACGAGGCGGCCAAGCGCTCGAGGGAGAAGCGGCGCATCAACGACTTCGTGCTGGAGAGCCGGCTGCTGGCGCTTAGCGAGGAGAATGCCAGGCTGCGCGCCGAGCTGCTGGCGCTGCAGTACCGCTTTGGCCTGCTGAGGGAGCCCACCCTGCCTCCCGCCATGCCCACCCCCAGCCCCCACAATCTGCCACCCTTCCAGCCCAGTTTCTGGAGCCTGAAACCCGACCGCGCCTCCTTCATAGGGGGTACAGAGGAGCTGTGGCTCCCGGGCCGGGACGCGGAGGGGGCCCCACTGTCCGACCCGCCAACCTCCAGCAGCAGCGTCACGGCTGGGGAGCACAGTCCAGGCTGCTGCACCAGCGCAGAGGAGAACCCCCCAAGCCCCCCGCCGCCCCGGACGCACAGGGGTGGTAGTGCTCACCCCACCAGGAGGGTAGATCGTCTGAGAGCCTCCAGCCCAGTTGGACCACGGGGGAGAGGCCAGGCCCAGACCGGTGGAAGCAAAACGGCCGAGACGAAAGCCTACTATCACGTCTCATCTAGCAAAGACTCGCCCAGGGCCCTGgattcctcctcctcatcttcgCCCTCTTCCTCCAAGCGGCAGTTTCCTACTCCTTCCCTCCCCGTGCCCACCCGTCCCTCCACCCCTCCGCACTCGTCGCCCTACGCCACCCAGGCCTGGCTCCTCCCCAGTCTGAGTCACACGGCAGTCAGGAGCAACCTGCTGTTGCCCTGGGGCTCCCAGCACCTCTCCCCCACGCCCCTCCTCACCAAACTGCCCCTCTACCTGCCCCTGGGCGACCCTGAGCTGCGCAGACTGCCCCCTGCGCTGCACTACGGTGACACCCTCAGCCTCCAGCCCCAGGAGCAGGTCCAGAGCAAGATCAACATGCTGTCGGCAGAGGTGGCACAGCTCAAGAGATACATCGGCACAGAGCACAGCTAG

Function

NR:

description
PREDICTED: nuclear factor interleukin-3-regulated protein-like

GO: NA

KEGG:

id description
K12114 VRI; vrille

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005854 True 1203 mRNA 0.67 1 11205387 11206589

Neighbor

gene id symbol gene type direction distance location
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding upstream 33313 11171014 ~ 11172074 (+)
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding upstream 64555 11139798 ~ 11140832 (+)
AMCG00005812 NA coding upstream 102164 11098409 ~ 11103223 (+)
AMCG00005813 NA coding upstream 108019 11092831 ~ 11097368 (+)
AMCG00005869 unc13a coding upstream 242700 10929794 ~ 10962687 (+)
AMCG00005853 LOC104941186,LOC107581323,LOC107678192 coding downstream 36250 11242839 ~ 11243798 (+)
AMCG00005873 NA coding downstream 118242 11324831 ~ 11331121 (+)
AMCG00005874 plekhj1 coding downstream 133015 11339604 ~ 11343604 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding downstream 250909 11457498 ~ 11460743 (+)
AMCG00005908 NA coding downstream 271106 11477695 ~ 11486383 (+)
G154775 NA non-coding upstream 25150 11174395 ~ 11180237 (+)
G154722 NA non-coding upstream 205998 10997649 ~ 10999389 (+)
G154583 NA non-coding upstream 537126 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 628950 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 679335 10523967 ~ 10526052 (+)
G154815 dot1l non-coding downstream 155416 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 163835 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 172191 11378780 ~ 11379289 (+)
G154847 NA non-coding downstream 209476 11416065 ~ 11416329 (+)
G154863 NA non-coding downstream 242891 11449480 ~ 11465625 (+)
G154756 NA other upstream 119376 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 195033 11006798 ~ 11010354 (+)
G154636 LOC108435919,LOC108271001 other upstream 289658 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 468761 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 490680 10679937 ~ 10714707 (+)
G154798 NA other downstream 113375 11319964 ~ 11361770 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 199717 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 395313 11601902 ~ 11610151 (+)
AMCG00005895 NA other downstream 696763 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1485227 12691816 ~ 12709543 (+)

Expression


Co-expression Network