AMCG00005862


Basic Information

Item Value
gene id AMCG00005862
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10543534 ~ 10551355 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005862
ATGGGAGAGACAGGCGTGCTAGCGAAGGGCGGTGCAGGCCCCAGCACCGGCAGGAGCGCGGCCCCATTTTCTGCCGAGATGAAGAGCAGAGCGGCGGGAGATGTGTCTGTGCCGTCTGTGCCGTCTCACATGGGGCCCTCATTAGAGATGGGCCACACCGAGGGGAACCTGTTCACCGCAACAGTGACGGACTTCCTGGCGATCGACGCCCAATGGACATCCTTCCTGAAGGCGCGTCTCAACTGCTCCGTCCCTGGCGACGCCCACTTCTACTTCAACGTGCTGCAGTCCACCAGCCCGGTCATCTCCCTGCACGGCCGGCCCACGCTGCTCGCCGTCTTCTCCACACCGGCCAACAGATTCAAGGAGCAGAAATCCCCAGAGTCCATCTGGACCCCGGTACCAGATGAGATCATCCCCAGACCCAGCGGATCGGTGCTCAAGTTCCTGATCCAGCCCAGTGGCGCCGGTCGCTCCACCTACAGTAGCCTGTTCCTGGAGGAGTTCCAGGGCTTCCCCCCGGACAAGCTGCCCTTCGAGCAGGATGTGGAGCACGGCAACACCTCTCACTTGGGAGATTGTGATGGGCTTCTGCAGGAGAGTTTTGTGGAGGAGCCAGAGGGGCTGGTGTCCGTGAACCTGCTGGTTCTGTCCGCAGTGTCGGCCTTCGCCACTGGGGCGGCGCTGTCAGGCCTGGCGGTGTGCTGGGCGATGGGTCGGCAGGGCGGGCCAAGGGTGCGCAGTGGGGGGGCGGTCTCTGGGGGCAACCGCCGCAAAGGAGACAAGGAGCAGAGCATGCTACCCCAGGGCGGGGGGGGCTCGGTGGTGAGTGTGACGCGGCCCAGCAGCGGGTGCGGGGGTGGTGAGCGCCCGTCCCGGGGGCAGTCCGAAACGCTGCTGGCTCCGCTCATGGTGCAGAACGGCTGGCAAGGCGTGGGGGGGGTGGTGCGGCTCGGCCCGCCGGACCTGGACCCGGGGCTGCTGCCCACGCCCGAGCAGACGCCCCTGCAGCAGAAGCGCGCCCCCCCAGGGCTCCGTCTCAGCGACTCCGACTGGGACCAGAGCCAGAGCTACCTAGGCCCCCCCGGCCCCACCACACTGCTCTACCTGGGGGCCAAGCACCTGGGTCCGGGCCGGGGGCGGCACCCCGAGGATCACTCCGAGCCCACCCTGCTGTCCGACCGCCACTACCTCTCCCTGGCTGTGCGCGAGCCCCACCCCCAACAGCCCCCCCGTGAGTCGGTGCGCCCCCCCGCCCTGCGCAGCTCTGTGGGGGAGTGTTGCCCCGCCACACCCCAGGACAGCCCCCCGCCCCGCCGCGCGCTGTCCGCCCCTGGGGAGGCCCTGCACTGGAGCCCCGAGAGCCTAAACTTCAACAGCAACAACGCCTCTCACGGGCCCCCCCACTATGCCAACCCCTCCCGGCGTGCTGTGCTGCAGCCCCCGCAGGCACTCAGCAGCCTGGCCGACCTCAGAGAGCTGCTCAGTAAGGGCCACGAGCGGACTCCCTCCGGACAGTGA
>TU194684
CGCCCCGCCGCGCGCTGTCCGCCCCTGGGGAGGCCCTGCACTGGAGCCCCGAGAGCCTAAACTTCAACAGCAACAACGCCTCTCACGGGCCCCCCCACTATGCCAACCCCTCCCGGCGTGCTGTGCTGCAGCCCCCGCAGGCACTCAGCAGCCTGGCCGACCTCAGAGAGCTGCTCAGTAAGGGCCACGAGCGGACTCCCTCCGGACAGTGAGCACGGCCCTCCCTGCCCCCGCCTCGCCCTCTCTCCTGAGCGGACTGTAGCTGCAGAGAGAGGACAGGCCTGTCCCTGGGGGCCCTGTGGGGGGCTGTGTGGGGACACTGCAGGACAGCTAGGACACAATCAGCTGCCGACGGTCCCGCTGCTCTGAAACATCCCCTAATATTAGACacactgccctgccctgccctgccctgcctgtCCTGTCTCTTACCCTGCCTTCTGTAGCCAAGCCAAGGACTGATGCACAGTGGACAGTGTCCCCAAGACAGGGACAGGAGAGCAGGGACACTACAATGTGGGGAGCCAAGGAGGGACACCGGTCTGTGAGGAGAGCAGGCCGATGGGAATCTCAGGGACTCGGTGGCGCATTGGCAGCACTGCCCCTGTGCATTCTGGGAACTGTCGCTCACTGAACGTGCTGTGTTGATGTGATGGCTAGGAGCAGCGCGGTGAGAGAGCCAGGCCGGAGTATTAGCCGTGTCCAGCACTGACCAGCACAGTACTGCCCCTGACCCGGTACCAGTGCCCCCTCTACTCCAGTGATCTCTTGAATGCTGTGTAAATGACCCTCACCCACCCCCCATTGTGCCAAACACAGCTGATTAGACAGAGTGGGTCAGTGTTGCTAATGGGCTAAGAGAGAAAGATAGATGAATAGAGAGAatgagacacacatacacagtgaaCTGGGACTCACGTTCTTTGGCTCTCTGAGACCTGAGATGAGCACCACCATCCCTGTGCACTGGATCCCCACAGCCAATCACTGCACTGGATCCCCACAGCAGCCGTGCATCCTCTCCTCGGCTCTCGGATTTCTCCACAGGCTCGGCTGCTCCACCTCCCCCTCTGTAAAGTGTGTGTCCCCCCACCAAGCACGGCTCCCCCACTCTGTCCCGTTCACCGAGTGGAccgcgccccccccccccccccccccccccccccccacgcacACCCTGAACTGATAGGGGTCTCAAAGAGAAAGACAAGGAAAGGAAGACGGAGAGAATCAGTTTTCAACGGCTGCACCCCTGTACAGATTCAAGAGAAGCACAagattttttgcatttttgtaaagtCCTAGAGAAGTACAATAGACAGCACTGATTACAAATGTcgatatatttttacttttttttttccggtCGGCTCTGATTGTTCCGTTTGTTTTggggtttgatttgatttgactgGATGTTCTGTTTCTGCGCTCCTTTTGGAATTGTGTTGCTTCAGACAGCGTGCGTTTGTGGCAGGACTGTGTAGGGGCTGGCGGTGCCCACAGCTGGCCACCTGTCCATCTGGTTGTGGTCTGGAAgcagggtgggtgggtggggggggatggCACACCTGCCCTCTGACCCTATTAACCTCTTGACCCCCGCCTGTCCCCCCATAAGAGTGCCAGTGCTGTTTCGGACAGTGCTCTGCTTCCCCCTGGTGGTCTGGGGTGGCACTGCGCTGTGAGGGGAGGGGCAAGTATAGCACCCCACTACCTGCAATACCATTAAATCCTGAGAGTATATTTTATAACTGTCttgcaatattttaattctaTAAAATGCGGAGACAGGCACATGTAACTTAACCCCTTCCTGCTCGAGCCCCCCAGGGTACAGAGCTACACCACTGCCTGCATAACATGGGATTTCAAaatgacccctgacccctgatcTGCCCACAGCCGCCCTGACAGCCCTGTCTGTCACACTCCAGACACTCTGCTTGCTCTCTGTCATTCTCTCACTCGCTCACTCTAGTTCTCTCTAACTCATTCTCTCTCactatcactctctctctcactctgccaCCTTTCTTATTCTAATAAATGATCCGAATGTTTCCTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005862 False 1521 mRNA 0.69 7 10545392 10551355
TU194684 True 2070 lncRNA 0.57 1 10543534 10545603

Neighbor

gene id symbol gene type direction distance location
AMCG00005859 NA coding downstream 3488 10526146 ~ 10540046 (-)
AMCG00005861 LOC108230546,LOC102305552,LOC100698652,LOC101481066,LOC102203928 coding downstream 23916 10508657 ~ 10519618 (-)
AMCG00005860 sh3gl1,LOC103358795,LOC102230617,LOC104918435 coding downstream 40852 10489878 ~ 10502682 (-)
AMCG00005823 NA coding downstream 64945 10470169 ~ 10478589 (-)
AMCG00005822 NA coding downstream 88894 10438294 ~ 10454640 (-)
AMCG00005863 NA coding upstream 69 10551424 ~ 10557755 (-)
AMCG00005805 NA coding upstream 108456 10659811 ~ 10665255 (-)
AMCG00005838 plpp2,lpp2,LOC106584410 coding upstream 217436 10768791 ~ 10777146 (-)
AMCG00005828 NA coding upstream 237199 10788554 ~ 10806283 (-)
AMCG00005830 NA coding upstream 267515 10818870 ~ 10828071 (-)
G154400 NA non-coding downstream 398603 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 404609 10137428 ~ 10138925 (-)
G154391 NA non-coding downstream 451918 10089554 ~ 10091616 (-)
G154280 NA non-coding downstream 970626 9572215 ~ 9572908 (-)
G154260 NA non-coding downstream 1105635 9435880 ~ 9437899 (-)
G154575 NA non-coding upstream 24615 10575970 ~ 10576502 (-)
G154642 NA non-coding upstream 138793 10690148 ~ 10693965 (-)
G154675 NA non-coding upstream 251209 10802564 ~ 10818716 (-)
G154715 NA non-coding upstream 428203 10979558 ~ 10983480 (-)
G154723 NA non-coding upstream 446422 10997777 ~ 10999382 (-)
AMCG00005850 NA other downstream 190752 10295599 ~ 10352782 (-)
G154250 NA other downstream 1108594 9425290 ~ 9434940 (-)
G154142 NA other downstream 1450961 9090422 ~ 9092573 (-)
G153806 NA other downstream 2418849 8091748 ~ 8124685 (-)
AMCG00005704 NA other downstream 2542129 7999336 ~ 8001405 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other upstream 187189 10738544 ~ 10752114 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other upstream 292486 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other upstream 298160 10849515 ~ 10865796 (-)
AMCG00005876 oaz1,oaz1s other upstream 768905 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 785240 11336595 ~ 11339135 (-)

Expression


Co-expression Network