AMCG00005873


Basic Information

Item Value
gene id AMCG00005873
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11324831 ~ 11331121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005873
CCGCACCACAACCTGGACTTGTCCCCCTGGCCTGCCCGCCCGCACCGGAGCCTCTTCGGCACCTGTCCCTGTCCGTCTGGCTGTGAGGGGAGGCCACAGGGGGGGCGGGAGGGCGGGGAGCTGCAAGACGCCCGCAGGCCACACGAAACACACgctcactctctcccccacgGACCGACCGCCCAGCCGGCCTACAGCCCAGtgttGATGGAGGAGAGTGTGTTCGAGACGTTTGAGGGGGATATGGGCTCCGAGGAGCTCTTGGAGGAGCTGCTGGCTCAAGAGGCCCAAGAGACCCAAGAGGCCCCAGACCCCTTAGCCCCACAGACCCCcacgccccccccacccagaaAGCAGACTCGCAGCCCAGATGCTCTGGATTTCTGGGAGGACGACCCGCACACGCTCGAGGTGGGGGTGTTACCGGCCTGCATCAGTGTGGTGGAGGATAGAGCAGCTGAACTGCCCGAGACCTCCATCTGGGACTACATGCTCTGGTGGAACTGGGTGGCGGAGGAAGACGAGGCGGATGAGGCAGAGAAGTCAGAGGCCGAGGCACCTTGGACAGCAGAGCCACGGAGGAGACgcagaggagaggaagaggagggcgGAGGAAGGGGCCATATCAGACGCAGGAACTTGTCAGGGAAGGGCCTCCTGAAGAGCAAAGAGGAGCatgggaagagagggaggagggaggagagagagaatgtgaaaggcaaggaggagaaggaaaaggagaagaagaaggaggggAAAGCAGATAAGAAAAGGCAGTGGGAGGAGAGGCAGAAAGAGCGCAAACTGGAACGAAAGCAGATGCCCCCGTCTGCCCACGGCAAGCTGGAGGAGGAGCGCGGGATGAAGGCTCACCGCTTCATCTTCGGAAACAAGTTCACCCGCAAGGGGAAGGCAGAGCACAGCCCCCAGAAGACAGGGAAGAAAGGGAGTGATGGGAAGAAAGTGAAAAAAGACGTCAAGAAGAAAACATAAACGACCTCAGCCTGACccgagggtggggggggtagtGAATGATCAGTACTGAAATACTGCATggcaattaattttgtttccagttgtttttttccttccgtACCATGGTTCTGCTCGGctcactgtgctgtgtgaaATGTGAGCGGAAAAAATGCGGTAAAAGTgagaaaattataaaacacaaacagactcACAACTTGCCTCAGTCATGCGGTCACACGGACACAACTCCAGCACAGCACTGGGTCAGAAATGTAACCTGTGATAACCACCTGACActcactcaatcaatcaatcaatcaatcaatcaatcataaaCAAGGCCTGATTAAACCTTCTGTCAGATTTGACGCCAATTTGAGAGGCCATTCTGACCCAGGGTGCTGCCTTTTGTCATCtgactatttttgtattttttggccAAAAACGTGTTGCTTAATCTAGTTACTATAACAATTAGCATTTCAAAACTTTGTTGGCATGTCTTTGACAGCCAGCAGCCTGTACGAGGCTTCTGATTGGAGGTACGCTTACCTGTGATGTAATTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005873 True 1544 mRNA 0.55 5 11324831 11331121

Neighbor

gene id symbol gene type direction distance location
AMCG00005853 LOC104941186,LOC107581323,LOC107678192 coding upstream 81033 11242839 ~ 11243798 (+)
AMCG00005854 LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969 coding upstream 118242 11205387 ~ 11206589 (+)
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding upstream 152757 11171014 ~ 11172074 (+)
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding upstream 183999 11139798 ~ 11140832 (+)
AMCG00005812 NA coding upstream 221608 11098409 ~ 11103223 (+)
AMCG00005874 plekhj1 coding downstream 8483 11339604 ~ 11343604 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding downstream 126377 11457498 ~ 11460743 (+)
AMCG00005908 NA coding downstream 146574 11477695 ~ 11486383 (+)
AMCG00005865 NA coding downstream 164020 11495141 ~ 11507437 (+)
AMCG00005866 NA coding downstream 227328 11558449 ~ 11562627 (+)
G154775 NA non-coding upstream 144594 11174395 ~ 11180237 (+)
G154722 NA non-coding upstream 325442 10997649 ~ 10999389 (+)
G154583 NA non-coding upstream 656570 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 748394 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 798779 10523967 ~ 10526052 (+)
G154815 dot1l non-coding downstream 30884 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 39303 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 47659 11378780 ~ 11379289 (+)
G154847 NA non-coding downstream 84944 11416065 ~ 11416329 (+)
G154863 NA non-coding downstream 118359 11449480 ~ 11465625 (+)
G154756 NA other upstream 238820 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 314477 11006798 ~ 11010354 (+)
G154636 LOC108435919,LOC108271001 other upstream 409102 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 588205 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 610124 10679937 ~ 10714707 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 75185 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 270781 11601902 ~ 11610151 (+)
AMCG00005895 NA other downstream 572231 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1360695 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 1380657 12711778 ~ 12714571 (+)

Expression


Co-expression Network