AMCG00005874 (plekhj1)


Basic Information

Item Value
gene id AMCG00005874
gene name plekhj1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11339604 ~ 11343604 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005874
GGGAAATATGCTGTGTTATGTGTGGGAACAAATATCGATAAGGACTAGGATTTGAGATAAACCCACTTCCGGGTGGAGCAGCGTCTCGCCTGCAGACGGCGGTGGACAGCTGCGACACGGCCAGTCCGGCTGCGGGATCCGCGGAGAGAGCAAATGAGAGCACGGAAAACAGAGAGAGTTGGCCATagaggagagagcgagagattcGTGCAATGCTCAACGGACAGGGCGTCTTTTAATTTAtaagagaggagagggggaagggggcaCAAGACAGGCGCAGAGGCGGAGAGGAGAGGACAAGGACAGGGCTGGACACGGGCGAGAGTCCGCGGGCCGCAGTGGTATGGTCGCCCGGCTGTAGCGGCTCCGGGGAGGGATGCGCTTCAACGAGAGGGAGCTGGTCTCCCTGAGCCGCCAGCCGTCCGAGCGAGCGGCCCAGCTGGGGATGCGGGGGCCCAAGAAGGGAGACGTGTTGAAGAAACGTCTGGTGAAGCTGGTGGTGAATTTCCTGTTCTATTTCCGCACAGATGAGGAAGAGcCCATGGGTGCTCTGTTGCTGGAGCAATGTCGGGTGGACAGGGAGGACAGCCAGACCTTCTCCATCGTGTTCCTGGACGAGTCTGAGCGGAGGTACCTGTTCGAGTGCGACACCCAGGAGCAGTGCCAGGAGTGGATCGATTCCATCGTCAAGGCCAGTCAGGCTGTGCTATGTGAGGGTGAGGCCAGTGGGAATGCAGGTCTGAGCACCCAGGTCAAGAGGCACCCCTACCCActagtctgtttttatttgagcctgAAGGGGTGA

Function

symbol description
plekhj1 Predicted to be involved in endosome organization; receptor recycling; and retrograde transport, endosome to Golgi. Predicted to be active in early endosome; recycling endosome; and trans-Golgi network. Orthologous to human PLEKHJ1 (pleckstrin homology domain containing J1).

NR:

description
PREDICTED: pleckstrin homology domain-containing family J member 1

GO: NA

KEGG:

id description
K24021 PLEKHJ; pleckstrin homology domain-containing family J

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005874 True 808 mRNA 0.59 5 11339604 11343604

Neighbor

gene id symbol gene type direction distance location
AMCG00005873 NA coding upstream 8483 11324831 ~ 11331121 (+)
AMCG00005853 LOC104941186,LOC107581323,LOC107678192 coding upstream 95806 11242839 ~ 11243798 (+)
AMCG00005854 LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969 coding upstream 133015 11205387 ~ 11206589 (+)
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding upstream 167530 11171014 ~ 11172074 (+)
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding upstream 198772 11139798 ~ 11140832 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding downstream 113894 11457498 ~ 11460743 (+)
AMCG00005908 NA coding downstream 134091 11477695 ~ 11486383 (+)
AMCG00005865 NA coding downstream 151537 11495141 ~ 11507437 (+)
AMCG00005866 NA coding downstream 214845 11558449 ~ 11562627 (+)
AMCG00005885 NA coding downstream 339205 11682809 ~ 11686775 (+)
G154775 NA non-coding upstream 159367 11174395 ~ 11180237 (+)
G154722 NA non-coding upstream 340215 10997649 ~ 10999389 (+)
G154583 NA non-coding upstream 671343 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 763167 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 813552 10523967 ~ 10526052 (+)
G154815 dot1l non-coding downstream 18401 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 26820 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 35176 11378780 ~ 11379289 (+)
G154847 NA non-coding downstream 72461 11416065 ~ 11416329 (+)
G154863 NA non-coding downstream 105876 11449480 ~ 11465625 (+)
G154756 NA other upstream 253593 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 329250 11006798 ~ 11010354 (+)
G154636 LOC108435919,LOC108271001 other upstream 423875 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 602978 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 624897 10679937 ~ 10714707 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 62702 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 258298 11601902 ~ 11610151 (+)
AMCG00005895 NA other downstream 559748 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1348212 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 1368174 12711778 ~ 12714571 (+)

Expression


Co-expression Network