AMCG00005878


Basic Information

Item Value
gene id AMCG00005878
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11299612 ~ 11306670 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005878
gctctgattggctgagctcGGCGATGACAGGTTACTTGTCCGCCTTGTCCTGCCCCGCTGCCATCGCCGAAATGACGCAGGCCTACTTCTACGACCATGAGAGCGGCTCCGAGATCGAGCCAGAGGTTCGGCCAGTGGCGACATCCGGGTTCCTGAGCCGCCTCATAAGCCAACTTGCGCAGCTTTGGCCCTTCAAGGTTATGGTGCGTGCCCTGCGCGGCCTGGCCGGGCTGTCCCCTGCGGCGGGTCGGCAGATCACCGGGGAGACCGTGTCCCCGGGGAACGTCCGTCACTGCCGCACCGGGAAGAAACGTCTGCGGCGCGTCACCCGGCTGCTGCTCTCCGTCACCCCCCTCTGGCTGCAGTGTGTGCTGGGGTACCCTGTCTGCACGAGTATCGGCTGCTCCCTCTCCCCAGAGATGCTCTGCTCTCCCACCAAGCCTTCCGGGAAGGGCAGCAAGAGGAAGCAGGACGACCTGGATGAGGAGGAGCAGCAGTCCTGGGTGGAGGCGCTGACTGTGGAGCTGGGAGACGAGGACAGCGAGAACGACCCTGACTATCAGCCAAGCACTGAAGGGTCGACGGACAGCGAGGAAAACCGCACGTTCAATGACACCGAGACGGACATCGAGGTGGAGGTGAAAGGGGACCAGCACATGATCAAGGACCTGCCCCAGaCTGTATTGTAA

Function

GO:

id name namespace
GO:0005938 cell cortex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005878 True 689 mRNA 0.63 6 11299612 11306670

Neighbor

gene id symbol gene type direction distance location
AMCG00005855 LOC108427150,LOC107696585,LOC108280165,LOC107552683,LOC107724989,LOC107549819,LOC100151059 coding downstream 33202 11263074 ~ 11266410 (-)
AMCG00005852 NA coding downstream 109307 11180934 ~ 11190305 (-)
AMCG00005814 map2k2 coding downstream 206070 11082498 ~ 11093542 (-)
AMCG00005845 NA coding downstream 221998 11064028 ~ 11077614 (-)
AMCG00005843 NA coding downstream 268528 11013677 ~ 11031084 (-)
AMCG00005882 NA coding upstream 25102 11331772 ~ 11334954 (-)
AMCG00005880 dot1l,LOC107593341,LOC107729667 coding upstream 54487 11361157 ~ 11367917 (-)
AMCG00005881 NA coding upstream 63590 11370260 ~ 11372316 (-)
AMCG00005910 NA coding upstream 72892 11379562 ~ 11392009 (-)
AMCG00005914 LOC106584417 coding upstream 102997 11409667 ~ 11412189 (-)
G154791 NA non-coding downstream 15214 11284128 ~ 11284398 (-)
G154782 NA non-coding downstream 91436 11207031 ~ 11208176 (-)
G154745 NA non-coding downstream 221411 11001674 ~ 11078201 (-)
G154723 NA non-coding downstream 300230 10997777 ~ 10999382 (-)
G154715 NA non-coding downstream 316132 10979558 ~ 10983480 (-)
G154817 NA non-coding upstream 3028 11309698 ~ 11319984 (-)
G154848 NA non-coding upstream 109147 11415817 ~ 11416388 (-)
G154906 NA non-coding upstream 262603 11569273 ~ 11613611 (-)
G154909 NA non-coding upstream 307004 11613674 ~ 11614383 (-)
G154954 NA non-coding upstream 383070 11689740 ~ 11690048 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other downstream 386867 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 433816 10849515 ~ 10865796 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other downstream 547498 10738544 ~ 10752114 (-)
AMCG00005862 NA other downstream 748257 10543534 ~ 10551355 (-)
AMCG00005850 NA other downstream 946830 10295599 ~ 10352782 (-)
AMCG00005876 oaz1,oaz1s other upstream 13590 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 29925 11336595 ~ 11339135 (-)
AMCG00005879 dot1l,LOC106920479 other upstream 42575 11349245 ~ 11360874 (-)
AMCG00005875 NA other upstream 67805 11374475 ~ 11376538 (-)
AMCG00005989 NA other upstream 1362586 12669256 ~ 12675994 (-)

Expression


Co-expression Network