AMCG00005880 (dot1l,LOC107593341,LOC107729667)


Basic Information

Item Value
gene id AMCG00005880
gene name dot1l,LOC107593341,LOC107729667
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11361157 ~ 11367917 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005880
ATGTTTGCCGACGTCATAGAGGCCTGGACAGCAGTTGGCTCTGTGACGGACAGCCCCCAGCACAGACCTGCTAGTTATCAGGAGACCCAGCTGTCTGCATTACATAAACTGAAGCAGGGAACTGCAAAGCATGATGCAATGAGCTACCCGCGTAGTGGTGGGGTGTGGTGTTACTCAGTTAGAACACCCAGCCATGAGTCACACTGGGAGGGAGGGGAGTTAGACAATGAGGGAATTACACAGAACGAGAGAGgcggagagatggagagagacagcgCACcaaagagggggagaCTGTGGGCCTCCCGGGCTCTGTGCTGCGACAAGCTGCACTTCGAGAGCATGCAGAGGCTCTGTGACAAGTACAACAGGGCCATCGACAGCATCCATCAGCTGTGGAAAGGCACCACTCAGCCCATGAAGTTGAACACGCGTCCCTCGAACGGCCTGCTGAGGCACATCCTGCAGCAGGTGTACAACCACTCCGTCACCGACCCCGAGAAGCTCAACAACTACGAGCCCTTCTCTCCCGAGGTGTACGGGGAGACCTCCTTTGACCTGGTCGCCCAGATCATCGACGAGATCGAGATGATGGAGGACGACACCTTCGTGGACCTGGGCAGCGGAGTGGGACAGGTGGTGCTGCAGGTTGCTGCGGCCACGAACTGTAAACACTACTTCGGAGTGGAGAAGGCGGACACCCCGGCAGGCTACGCCGAGTCGATGGACAAGGAGTTTAAGAGGTGGATGAGGTGGTACGGGAAGAAGCACGGCGAGTACACGCGGCAGGGCTGTGGCAGAGGAGCTCCCGGCTGTCACAGTGGGGCCCCCGGGGCCATCTCGGCAGAGTTAAGGAGGGGCTCGAGGAGGCAGCTGGAGAGAGGGGACTTCCTGTCCGAAGAGTGGAAAGAGAGAATAGCGAACACAAGGTAG

Function

symbol description
dot1l Predicted to enable histone methyltransferase activity (H3-K79 specific). Acts upstream of or within canonical Wnt signaling pathway and intestinal epithelial structure maintenance. Predicted to be active in nucleus. Is expressed in hindbrain; intestine; and midbrain. Human ortholog(s) of this gene implicated in mixed phenotype acute leukemia. Orthologous to human DOT1L (DOT1 like histone lysine methyltransferase).

NR:

description
PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific-like

GO: NA

KEGG:

id description
K11427 DOT1L, DOT1; [histone H3]-lysine79 N-trimethyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005880 True 933 mRNA 0.59 11 11361157 11367917

Neighbor

gene id symbol gene type direction distance location
AMCG00005882 NA coding downstream 26203 11331772 ~ 11334954 (-)
AMCG00005878 NA coding downstream 54487 11299612 ~ 11306670 (-)
AMCG00005855 LOC108427150,LOC107696585,LOC108280165,LOC107552683,LOC107724989,LOC107549819,LOC100151059 coding downstream 94747 11263074 ~ 11266410 (-)
AMCG00005852 NA coding downstream 170852 11180934 ~ 11190305 (-)
AMCG00005814 map2k2 coding downstream 267615 11082498 ~ 11093542 (-)
AMCG00005881 NA coding upstream 2343 11370260 ~ 11372316 (-)
AMCG00005910 NA coding upstream 11645 11379562 ~ 11392009 (-)
AMCG00005914 LOC106584417 coding upstream 41750 11409667 ~ 11412189 (-)
AMCG00005913 cpamd8,LOC106584419 coding upstream 49977 11417894 ~ 11448583 (-)
AMCG00005909 NA coding upstream 82169 11450086 ~ 11451494 (-)
G154817 NA non-coding downstream 41173 11309698 ~ 11319984 (-)
G154791 NA non-coding downstream 76759 11284128 ~ 11284398 (-)
G154782 NA non-coding downstream 152981 11207031 ~ 11208176 (-)
G154745 NA non-coding downstream 282956 11001674 ~ 11078201 (-)
G154723 NA non-coding downstream 361775 10997777 ~ 10999382 (-)
G154848 NA non-coding upstream 47900 11415817 ~ 11416388 (-)
G154906 NA non-coding upstream 201356 11569273 ~ 11613611 (-)
G154909 NA non-coding upstream 245757 11613674 ~ 11614383 (-)
G154954 NA non-coding upstream 321823 11689740 ~ 11690048 (-)
G155003 NA non-coding upstream 564195 11932112 ~ 11932947 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 283 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 22022 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 36089 11320260 ~ 11325068 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other downstream 448412 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 495361 10849515 ~ 10865796 (-)
AMCG00005875 NA other upstream 6558 11374475 ~ 11376538 (-)
AMCG00005989 NA other upstream 1301339 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 1310488 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 1475848 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 1528637 12896554 ~ 12971406 (-)

Expression


Co-expression Network