AMCG00005884 (rgma,LOC103371300)


Basic Information

Item Value
gene id AMCG00005884
gene name rgma,LOC103371300
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11838001 ~ 11863038 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005884
ATGGAAGGGATCTGGACACTTTGTCGGGACTCCTTCCCACTGGAGTTTCAGCACATCACGTCACTCCACTACTGGGACACCACTGTTGGGCACAGAGGGGTGGGAAAGGGGAAGGTGGGCAGCAAGAAAAACATAGAACAACCATCCTCGCAGGAGCTCTACCTGTCTGTGCACTGCACctccacccccccgcccccaaggagGGAAAACACAATGGTGTCCCAAAAGGAGCTTTCGAAAGGCTGCGGCGCCGCGGCGCAGTCGAGGATCCCCATTGGAACTGGATGGATTGGCATGGGGAGAAGCGGACCTCAAAACCTGGCTAAGCGGCAGCTTTGGACCTCCGTTTCGTTTATGATGGTATTCTTCTCACTGTGGCCTAGAGCAGCACATTGCCAGCAGTGCCGTATCCAGCGCTGCAATGCGGAGTACGTTGGCGCCACCTCTCCGTCCAGCAGCCTGCAGGACGAGGCCCCGGTGACGGACGTGGACTATTGCATCGCACTGAGGGCCTACTCTCTATGCACCCGGCGTACCGCGCGCAGCTGTCGCGGTGACCTGGTCTACCACTCCGCCGTCTTCCGCATCAAGGAGCTCTTCTCCCAGCACAACTGCTCCAGCGACGGCCCCACCTCCCCGGCCAACAAGGCCCAGGGAACCTCGCACCCGGTCGTGTCGGAACTGTGCGACTACGAGAGCAGGGCGCTGGCCTCGGGCGCTGCCGGCTCGCAGAAGAAGTACGCTCACTGTGGATTATTTGGGGACCCCCACTTGCGGACGTTCCGGGATGAATTTCAGACTTGTAAAGTGGAGGGTGCCTGGCCCCTCATCGACAACCGCTTCCTGTCCGTGCAGGTCACCAATGTGCCGGTCGTCCAGGGATCCAGCGCAACGGCAACCAGCAAGATCACTGTGATCTTCAAGTCCTTCCGGGGCTGCACAGAGCAGAAGGTGTACCAGGCCACCACAGAGGACCTGCCCTCCGCCTTCCTGGACGGGACGCGCAGCGGGGGCGACGGGGGCAGTCTGTGGATCGTGGAGCGGGCTGGCGGCCAGCAGCCCTCGGTGCAGGTGGAGATCCAGGCGCGCTACATCGGCACGTCCATCATCGTGCGGCAGGTGGGGCGCTACCTCACCTTCGCCATCCGCGTCCCGGAGGACACCCTCAACTTCTCCGAGGAGAGTGGGGGGCTGCAGCTCTGCCTGCATGGCTGCCCCCGCAGCGAGCTCATCAAGGAGCACACGCTAAGCCGGCAGAACCTCAGCCCGAGGCTGCAGGGGGCCGGGGGTGCGGCGTCCGgcctccccctgcccccccgccaGGCCTACACTGTGGACCGCGCCACTGCCAAGTGCCGGGAGATCCTGCAAGTGGAGGACGTGTACTTTCAGTCGTGTGTCTTCGACCTGCTCACCACTGGGGACCCCGAGTTCTCCATGGCCGCCTACGGGGCTCTGGAGGACCTCAAGGCCCTGCCGCCCAGCAAACTGAAACAGAACTCGCCCAGGGTGCCGCGCGTCAACAACTCCACCCCCCCCACGCTGGGCCCCAGCTCCCGCACAGCCCAGTTGGTCATGCTGGCCCTGGCAGTGCTGCTGCTTTTGTAGAAAGtgaattacaaagaaaaaagggaagtaTTTTCAGCTTGAGGAAGGAGCCCAAGCAAATCTGTGGCTAGTCCTGTTTCAGAGCAGCTCCAGTCAGCTGTGGCGCCGCTCCCATTCATTCTCTCACCCTCCCCTTACAAGCCTCCCTTCAGAGTCCTAACCCACAAGGACGTTTCCAGACACTGAGAGACGCAGTCCTCCTAACGTTTTGATTGTTAAAGACGTTCACTTTAAGAGGATTTCAGAACGGAACCTTTTAGATCTTTTGTGCAGAGAGGGGGAATCAGGGCAACAGAAAGCAAAGAACTAACCAAGATGGGGTTAAATGCGagagatggggtggggggggatgctGGGAGACGTGTGAAGGCAGCTAAACAGAgatttgtgtaaatatatactttaaactGAATAATGTGCACGCAGCTGCATTGAGTGAGGGGTCCGGGGCGGGAGTGTGCGTGATATTGACAAAGCTGTGTCTTCCACGATTCCAGGTGTGGCCATACACTGCAGCTCATCCTGGCAGCTCCTTCGTTGCACATTGTATTGTAACCTTTTTGCACCCTCTCATCTAGTAATCATGACACACACTTAGAAAATCTGTGTATCTGAAATGGGTTCCAACAACTGTATGAAAATACTACCTATCCACGTCGCTTTTTAAAGACTTTCATTCTTGTAGTTGTCAGTTCTGTAGAGTCTGGTTTCAGCGTGGTAGTAGCATGGTAATAAAACCGGCACATGGAACTCTTTTTCTTACACTCCTTCCTCAAGCCTGCCTACTCCTGgtggtattttttaataagataaagaaacaaatcctctatataataata

Function

symbol description
rgma Predicted to enable coreceptor activity. Acts upstream of with a positive effect on membrane protein intracellular domain proteolysis. Acts upstream of or within cell morphogenesis. Predicted to be anchored component of plasma membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including brain; hindbrain neural plate; hindbrain neural rod; notochord; and tail bud. Human ortholog(s) of this gene implicated in multiple sclerosis. Orthologous to human RGMA (repulsive guidance molecule BMP co-receptor a).

NR:

description
repulsive guidance molecule A precursor

GO: NA

KEGG:

id description
K23096 RGMA; repulsive guidance molecule A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005884 True 2447 mRNA 0.57 6 11838001 11863038

Neighbor

gene id symbol gene type direction distance location
AMCG00005889 NA coding downstream 157179 11675135 ~ 11680822 (-)
AMCG00005891 NA coding downstream 163649 11670353 ~ 11674352 (-)
AMCG00005888 ell,LOC106613783 coding downstream 188679 11637138 ~ 11649322 (-)
AMCG00005887 isyna1,LOC107671814,LOC107549817,LOC107726320 coding downstream 210069 11622428 ~ 11627932 (-)
AMCG00005890 NA coding downstream 221188 11615392 ~ 11616813 (-)
AMCG00005900 NA coding upstream 33980 11897018 ~ 11902390 (-)
AMCG00005899 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700,LOC104964522 coding upstream 43528 11906566 ~ 11918065 (-)
AMCG00005901 NA coding upstream 55750 11918788 ~ 11930850 (-)
AMCG00005905 NA coding upstream 121625 11984663 ~ 11993731 (-)
AMCG00005893 polrmt,LOC102781777,LOC103149847,LOC101483880,LOC106937851 coding upstream 224005 12087043 ~ 12119953 (-)
G154954 NA non-coding downstream 147953 11689740 ~ 11690048 (-)
G154909 NA non-coding downstream 223618 11613674 ~ 11614383 (-)
G154906 NA non-coding downstream 224390 11569273 ~ 11613611 (-)
G154848 NA non-coding downstream 421613 11415817 ~ 11416388 (-)
G154817 NA non-coding downstream 518017 11309698 ~ 11319984 (-)
G155003 NA non-coding upstream 69074 11932112 ~ 11932947 (-)
G155058 NA non-coding upstream 140102 12003140 ~ 12023672 (-)
G155059 NA non-coding upstream 144430 12007468 ~ 12017366 (-)
G155073 NA non-coding upstream 262123 12125161 ~ 12126128 (-)
G155183 NA non-coding upstream 584482 12447520 ~ 12447719 (-)
AMCG00005875 NA other downstream 461463 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 477127 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 498866 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 512933 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 972205 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 806218 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 815367 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 980727 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 1033516 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 1057085 12920123 ~ 12949967 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020379 rgmd coding NC_007133.7 CM002906.2 19640309 ~ 19646421 (+)
grasscarp (Ctenopharyngodon idella) CI01000030_03253246_03261669 RGMD coding CI01000030 null 3253246 ~ 3261943 (+)