AMCG00005885


Basic Information

Item Value
gene id AMCG00005885
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11682809 ~ 11686775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005885
GTATTTCCGCCAATGCCAGAGATAAACGCTATATCCCCAAGACATGTTAACCGTGTGATACGGGTTTATTCTTCCTAATTATACAATGCCACTACTGCATTCGTATAGTGTTTGTATTAATGCATGCGCAGTTCAGGTTATAAAGACGTTCTGTGACGGAATCGCAAAGCTGAACGCAACTAGATTGTACGTAAACGGAGAGACAAAGGAAATGTCTGAAAGCTACGATCACCTTAAATGTGTTCAAAGCCAACTCTATCACTAGTGCGCTGTACAACCCCCCGCCAGAGTAGGGAGACCCTGAGGCGGCCACCTTACATCCATACTTCTGTCACTTTCTCATCAAAGTTTGCAGCCATTATTCTGTGAGGGATCGCTAAATAGTTCGCTTCCGCCCCGTGTCCCGCTAGAGCTTCCGTAGTTAACAGGTGGCACGTAGTGGAACAGGAAGAAAAGCGCCGAATAAAGCTCGTCGACAGGAGAGCAACATAAAGCGGCAAACGAAGCTTCCAAAATGCCAAAATCCAGCGAGGACTCTGTGTCTAACTCGgacagccaatcagatgccGAAGAGGATAACAAGCAGGCAAAGAACAAGAAGCCACCTGCAGAAAAGCCCTCCCCAGcccaaaagaaacagaaaactggGGAGGGCAGCTCACGCCCAGTCCCGGACAGAGAGCCCCCCAAGAAGAAGGCTGGAGCGGGGGGGGGGAACCAGGACGGGGAAGAAGAGAACATGATCCAGATCGGGAAGATGAGGTACGTGCGCGTGTCGCTGTTCAAAAGGAGGACCTTCATCGATATCCGGGAGTTCTACACGGACAGCTCGGGCAGCACCAAGCCTGGGAGAAAAGGCATTTCATTAACCACAGAAGAATGGAGCCAGCTGAAGGAGATCGTCCCAGAGATAGACGCAGCCATTCGCAAACTGTAAATCTCCCAGTGGCCCAgttctcttgtttttgttgtttttcatgttgaGGTCCAGGGATGgcagattttcctttttttattatagaaAGCTGATTTAGATTTCCTGtttccagttttatttaatgCTCCTGTTCTTAAGTGATCCTCTCCCCTATGTGTCAGCCCAGGGCCCAGATAATCTGATTTGAAAATGAACGAATTAAAATGATGGTGAAATAATGATATTGATAAGTTTCAGAAGCAGCACAAGTCTGTTTTAAAGAGGAGACTtaagcattttctgttttgattttgtcttgtTAAGTGTTCTGTAAATAGTTCAATTAATTTGTGGTGAcccaaaaaggaaaatatgatgtcaaataaatgaaaagtgcATTGGGTAGTGCATGCTTGGTTTTTTCTCCAACATTTATCAATCCCTATTTTTGTCTTGAGCTgtgatttaagaaacataagataATGAAAGCTTGGTAGCATTGTGGTATTTGACTTGAAGCACTTAAAGTATTATGAAGAGGTACAGAagaagtataataaaatataatggtaATAAGCGATAATAAAATGGTGATAGTTTGTAACAAAACAGGCATTTTTTGGATAGCTATAGCTAAAACAGGAGCTGCTCACTAATGCATATGCTTTGTGGCTTccaaaactaatacaaaaaatacatcactTTAATTGTTTGATGCAATTTGTTGATCTGAAAAAAACTATATGTAACTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005885 True 1670 mRNA 0.43 5 11682809 11686775

Neighbor

gene id symbol gene type direction distance location
AMCG00005866 NA coding upstream 120182 11558449 ~ 11562627 (+)
AMCG00005865 NA coding upstream 175372 11495141 ~ 11507437 (+)
AMCG00005908 NA coding upstream 196426 11477695 ~ 11486383 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding upstream 222066 11457498 ~ 11460743 (+)
AMCG00005874 plekhj1 coding upstream 339205 11339604 ~ 11343604 (+)
AMCG00005864 NA coding downstream 4046 11690821 ~ 11691592 (+)
AMCG00005883 celf5,LOC106956403 coding downstream 115657 11802432 ~ 11824637 (+)
AMCG00005896 NA coding downstream 245409 11932184 ~ 11935207 (+)
AMCG00005898 NA coding downstream 249074 11935849 ~ 11938386 (+)
AMCG00005897 NA coding downstream 265586 11952361 ~ 11972073 (+)
G154917 NA non-coding upstream 42883 11639686 ~ 11639926 (+)
G154916 NA non-coding upstream 44035 11638324 ~ 11638774 (+)
G154915 NA non-coding upstream 44790 11632091 ~ 11638019 (+)
G154908 NA non-coding upstream 68440 11613670 ~ 11614369 (+)
G154879 NA non-coding upstream 194295 11486492 ~ 11488514 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding downstream 219866 11906641 ~ 11912100 (+)
G155017 NA non-coding downstream 284049 11970824 ~ 12207954 (+)
G155018 fstl3 non-coding downstream 297888 11984663 ~ 11986924 (+)
G155053 NA non-coding downstream 514961 12201736 ~ 12203472 (+)
G155182 NA non-coding downstream 760705 12447480 ~ 12447684 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 72658 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 273137 11406306 ~ 11409672 (+)
G154798 NA other upstream 321039 11319964 ~ 11361770 (+)
G154756 NA other upstream 596798 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 672455 11006798 ~ 11010354 (+)
AMCG00005895 NA other downstream 216577 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1005041 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 1025003 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 1207345 12894120 ~ 12895452 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 1338989 13025764 ~ 13033408 (+)

Expression


Co-expression Network