Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00005889 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030142.1 |
| NCBI id | CM030142.1 |
| chromosome length | 21087710 |
| location | 11675135 ~ 11680822 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0000413 | protein peptidyl-prolyl isomerization | biological_process |
| GO:0030176 | integral component of endoplasmic reticulum membrane | cellular_component |
| GO:0005740 | mitochondrial envelope | cellular_component |
| GO:0005528 | FK506 binding | molecular_function |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | molecular_function |
| id | description |
|---|---|
| K09574 | FKBP8; FK506-binding protein 8 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00005889 | True | 1185 | mRNA | 0.60 | 7 | 11675135 | 11680822 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00005891 | NA | coding | downstream | 783 | 11670353 ~ 11674352 (-) |
| AMCG00005888 | ell,LOC106613783 | coding | downstream | 25813 | 11637138 ~ 11649322 (-) |
| AMCG00005887 | isyna1,LOC107671814,LOC107549817,LOC107726320 | coding | downstream | 47203 | 11622428 ~ 11627932 (-) |
| AMCG00005890 | NA | coding | downstream | 58322 | 11615392 ~ 11616813 (-) |
| AMCG00005912 | NA | coding | downstream | 205375 | 11463610 ~ 11469760 (-) |
| AMCG00005884 | rgma,LOC103371300 | coding | upstream | 157179 | 11838001 ~ 11863038 (-) |
| AMCG00005900 | NA | coding | upstream | 216196 | 11897018 ~ 11902390 (-) |
| AMCG00005899 | zmp:0000000521,LOC107696078,LOC107596226,LOC105888700,LOC104964522 | coding | upstream | 225744 | 11906566 ~ 11918065 (-) |
| AMCG00005901 | NA | coding | upstream | 237966 | 11918788 ~ 11930850 (-) |
| AMCG00005905 | NA | coding | upstream | 303841 | 11984663 ~ 11993731 (-) |
| G154909 | NA | non-coding | downstream | 60752 | 11613674 ~ 11614383 (-) |
| G154906 | NA | non-coding | downstream | 61524 | 11569273 ~ 11613611 (-) |
| G154848 | NA | non-coding | downstream | 258747 | 11415817 ~ 11416388 (-) |
| G154817 | NA | non-coding | downstream | 355151 | 11309698 ~ 11319984 (-) |
| G154791 | NA | non-coding | downstream | 390737 | 11284128 ~ 11284398 (-) |
| G154954 | NA | non-coding | upstream | 8918 | 11689740 ~ 11690048 (-) |
| G155003 | NA | non-coding | upstream | 251290 | 11932112 ~ 11932947 (-) |
| G155058 | NA | non-coding | upstream | 322318 | 12003140 ~ 12023672 (-) |
| G155059 | NA | non-coding | upstream | 326646 | 12007468 ~ 12017366 (-) |
| G155073 | NA | non-coding | upstream | 444339 | 12125161 ~ 12126128 (-) |
| AMCG00005875 | NA | other | downstream | 298597 | 11374475 ~ 11376538 (-) |
| AMCG00005879 | dot1l,LOC106920479 | other | downstream | 314261 | 11349245 ~ 11360874 (-) |
| AMCG00005877 | sf3a2 | other | downstream | 336000 | 11336595 ~ 11339135 (-) |
| AMCG00005876 | oaz1,oaz1s | other | downstream | 350067 | 11320260 ~ 11325068 (-) |
| AMCG00005831 | shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 | other | downstream | 809339 | 10849515 ~ 10865796 (-) |
| AMCG00005989 | NA | other | upstream | 988434 | 12669256 ~ 12675994 (-) |
| AMCG00005992 | NA | other | upstream | 997583 | 12678405 ~ 12711136 (-) |
| AMCG00006063 | ctxn1,LOC108441290,LOC106573568 | other | upstream | 1162943 | 12843765 ~ 12854803 (-) |
| AMCG00005936 | march2 | other | upstream | 1215732 | 12896554 ~ 12971406 (-) |
| AMCG00005939 | LOC100697221 | other | upstream | 1239301 | 12920123 ~ 12949967 (-) |
