AMCG00005893 (polrmt,LOC102781777,LOC103149847,LOC101483880,LOC106937851)


Basic Information

Item Value
gene id AMCG00005893
gene name polrmt,LOC102781777,LOC103149847,LOC101483880,LOC106937851
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12087043 ~ 12119953 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005893
GCCTAGTGTGAGCAGGCAGGGCTGCGCTGGGGGTTCATGTCAACATGTCCCTGCTGAGGCTGTGCGCTTTCTCCAGATCTCTGCCTGGCCGTGTCCTCTCGGAGAAACACGCTTTAACACAGCGGCTTTATGCCGATCAGTGTCACTTTTGCCTCCGACGGCGGAGCGACGGGAACAGGAGCGCAGGGGCTCCCTGGGCTGTGTTTCGCAGGAACGTCTCTGCCTGCATCCCCAAGAAACAGGACACCAAGAAGAGGACATGGGAGCAGACTCAGCTGGTGGATGTCCTGGAGGCCCGTATACAACAGCTCCAGTCAGATGTCCTGGTGGAAGTGAAACACTCGGAGGTGCAATTTGTTAGGACGCCCCCTAGCGAGAGAGGCGGCCCTGGAGTCAGGGGTATAAGGAGCACGGCGCGGGACAGCGGGGTGGCTGCTAAGGAAATGCAGGATAGCAAGAAGGGGGACGCCGAACGGCCATCTCTGAGAACCAACCCCAGCCGCTGGATGGAGAAACTGAAGAAGGAGAGATGGACCAAGAGCAGGAAACTCCAGCAGAAGGACAAGGAGAGCGAGCCGGAGCACAGGACAGGCAAGAGTTTCAAGACCATCAGTGGGACGCAGCCTGCTCCCAGAGCCACCACCGGGGGGAGTAAAGGGGTTCGAGCCGGCTCCTCCCGGGACCAGAAGCAGGTGCTATCTGGGGGCAGGCCTCCCAGCGGTGGGGAGGGGGACTCACGAGAGGCGGAGCTGGTGGCGGTGGAGGAGTTAGACCAGCGCCTGAACCAGTGGGACTCTGCCAGGCCCGAGCCGTTGCTGGAGTACGGGGAGGGCAGCCGCAATGCGGACAGCCAGCTCGGCATGTGCTCCTACCTGGAGGCCTGCATCTTCTCTGGGGACGTGCAGCGCGCGCACAGCTGCCTGCTGTACCACCACCGCAACCTCAGCCGCCGGAAAGTGCTTCCCATCAATGCCTACAACATCATGATGCGGGTCTGGGCCAAGAAGGGCTCTCTGAACCAGATTGGCCGTCTGTTTGTCATGCTGGAGGAGGCCGGCCTGAAGCCCAACCTGAGCTCCTACTGCGCTGCTCTAGAGTGTATGGGCCGGCATGGCAGCTGCTCCCCACGAGTAATCAACAGGTGCTtgcagcagctggaggaggaagGCCTCTCGGTGCAGGACGTGTTCAGGGACTGTGTGTTCAGGGAGGACGAGCGAGAGATGGTACTGAGGGCCATGCAGGTCGTGCAGCCCGACTTCCAGCCCAGCCTGGACACAGAGGCCCGGATCTGCTCTTCTCCTCTCATGCAAGACTTCTACATCAAGAGGGACGAGGCTCACTACCCCAAGATGGGCTTCTCCCTGGCGGAGCTGCGGGCGCGATTTGAGCAGCAGCTGGCCATGGAGCAGGCTGACACCATCACCATCGATTCAGTGGAGGCCTCCAAGCCCGTCACTGAGCACATGGCCAAAATGAGGGAGCTGCTGGGACTTCTGCGCACCCAGTGGCACCCAGTCCTGTTGCAGGCCTTCAGAGACAGTAAGCTGGTCCTGGCCAACAATGGGCAGAAGAGCTGGAAGATGAACCTGTACCCGTATCTGTGTTTGCTGGAGGAGCACGAGTACGTGGACATCATGCTACAGAGTCTGGTCAGGCTGCAGCCCAATGGGGAGTCCCTGCTGATCCTGGCCAAAGAGTTGGGCAACAAGGTCTACAACAAATACTGCATCCGGACAAAGGCCAGGAGTCTAATGCTGGACAAGATCACCACCATCTACAACAGATATGCTGAGCTGCTGGCCGAAGACACGGAGTCTAGCAAGCACTTGCCCCGGGAGCGCTGGGCGGAGCTGGAGGCGGGGCTGAACTCTGGCCCCTCCCTCCCGTGTGACGACACGCAGTGGCCCCACATTCTGGTGGTGCAGGTGGGTGCCCACTTGGTCGACCTCATGGTCCGAGAGGTCAAAGTGCACAGCAACATCCTGGCCCCCGCCCAGGAGAAGAAGCTCATCCCGGTGCTGTATCACATGTACACCTTCCGCAGCAATCGGCAGGTCGGCTTTATCAAACCCCACCCGATCCTGATGCATATCCTGTCAGAAGCCATGGAGACCAAGTTGACCTTTGACTCCTACGTGATGCCCATGCTGTGCCCACCGGTGCCCTGGACCTCCCCGAAGTTCGGCACCTACATCCTGACACCCACCAAGCTGATGCGCTCGGTAGATGGTGCGGTCCAGCACTCGCAGCTCCTGGAGAAATGCCCCCAGGAGGACCTCCACGCCGTGCTGGACTCCCTTAACCAGCTGGGCAACTGCGCCTGGAAGATCAACCAACCCCTGCTGGACATCATCATCTCCATCTTCAACGCTAAGGGCAGCGAGAAACTAGACGTCCCCCCGCCAGTGTCCGAGGCCCCCCAGTCGCCCCGCTTCAACCCCCGGGAGCCCTCGCTGTCCCTGGCGGAGAAGGCCTTCCTCAAACGCGAGGTGGCCAAGTGCCGGAAGAAGCAGGCAGAGATGCACAGCTTGCGCATGGACGCGCTCTACAAGCTCTCCATCGCCAACCACGTGCGCGACCAGGTCTTCTGGTTCCCGCACAACATGGACTTCCGCGGGCGCACCTACCCCTGCCCGCCTTACTTCAACCACCTGGGCAGCGACGTCACCCGCGCCATCCTGCTGTTCGCCGAGGGTAAGCCACTGGGGCGGCACGGCCTGGACTGGCTCAAGATCCACCTGgATGGCTCATGCAATGGGCTGCAGCACTATGCCGCTCTGGGTCGAGATGTGATTGGCGCCACCTCTGTGAACCTGGTGCCCTGCAAGGTGCCGCAGGACGTGTACAGTGGAGTGGCACAGCAGGTGGAGGAGTTCCGCTCGCGGGACGCAGAGAAGGGGCTGAAGATCGCCCAGGTGCTGGACGGCTTCATCAACCGCAAGGTGGTGAAGCAGACGGTGATGACGGTGGTGTATGGGGTGACACGATATGGCGGGCGGCTGCAGATCGAGAAGAGGCTCCGGGAGATCGAGGACTTTCCCAAGGAGTACGTATGGGATGCCTCCCACTACCTGGTGCATCAGGTGTTTTCCAGCCTGAAGGAGATGTTCACGGGAACTAGGGAGATTCAGGACTGGCTCACCGAAAGCGCCCGTCTGATCTCCAAGTCGGGCCGCTCTGTGGAGTGGGTGACGCCCCTCGGCCTTCCCATCGTGCAGCCGTATCACCGAACCAAGAACACCGTGCTCAAGAGCAGCATGCAGCATGTGAACCTTCAAGTCAGCTACGATGCCAGCGACCTCATGTCTCTGTTCTTGCTCTCTCCGCCCTTCACTGTCCTGCCCCCATCGCTGACCTGCAGGAGACCCGACACCGTGAAGCAGAAGAATGCGTTCCCCCCCAACTTCATCCATTCCCTGGACTCCACACACATGATGCTGACTGCTCTCCACTGCTATAGTGCCGGGCTGACGTTCGTCTCCGTCCACGACTGCTTCTGGACGCACGCTGTTACGGTCGACATCATGAACAAGGTGTGCAGGGAGCAGTTTGTGGCCCTGCACAGTCAGCCCATTCTCCAGGAGCTATCCAACTTCCTGGTGCAGAAATATGGCAGTAAACCTCAcaCCGATCATAAAAACAAGAAGTTCCTGGAGTTTAAGAGAATGGTACAGCTGCTGGCTCAAGTGCCCCAAACAGCGCTGCCCGGCAAACAAAACCGaacctgtaaaaataaaaaaaaacacaaaagcaaacagaCTTTTGGGGCTGGAAAGGTGAAACGAAGGAGGCAGCACTATTTTTGGAGAGGTCGTGTCAGCGCTTATTTGTACGAGATGCTGGCATCCCAGATATACACCCGCCTGCTCACCCGGAGACCTGGTGTGCCCTACTGGACAGGCACAGTTGCCAAGCTGTGTGCGCTAAGAAAAGCTTGCCAAAGACAGaattgcaagaaaaacaacGACGAAAACAACCGAATTACATCCCACACTCTCACCTTCCTGCAGGGAGGGAGTCGAGCTCACCTGGGGGGTTTCAGACACATGAGCAGAGCCTGCTTTATAGACACCCCAGTAACCATGGCGATGCTGGGCTGCAGTGGAGTGACAGCTCGTTTCTGCCCCTTTAACGAGTCTGACGTCACCGTTCCCAGGACAGCAGGGCACGGAGCTTCAAGGGAGTGCGGCCAAACCTTCCTTTTGCGTCGCCTTGGCTGGGCAGTGACTGACACGCGCTCGttttctccatctctgtctAGAGCTGTAACAGCAAAATGA

Function

symbol description
polrmt Predicted to enable DNA-directed 5'-3' RNA polymerase activity and mitochondrial promoter sequence-specific DNA binding activity. Predicted to be involved in mitochondrial transcription. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be part of mitochondrial DNA-directed RNA polymerase complex. Is expressed in brain; eye; and gut. Orthologous to human POLRMT (RNA polymerase mitochondrial).

NR:

description
PREDICTED: DNA-directed RNA polymerase, mitochondrial-like

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K10908 POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005893 True 4283 mRNA 0.59 22 12087043 12119953

Neighbor

gene id symbol gene type direction distance location
AMCG00005905 NA coding downstream 93312 11984663 ~ 11993731 (-)
AMCG00005901 NA coding downstream 156193 11918788 ~ 11930850 (-)
AMCG00005899 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700,LOC104964522 coding downstream 168978 11906566 ~ 11918065 (-)
AMCG00005900 NA coding downstream 184653 11897018 ~ 11902390 (-)
AMCG00005884 rgma,LOC103371300 coding downstream 224005 11838001 ~ 11863038 (-)
AMCG00005960 NA coding upstream 74627 12194580 ~ 12212371 (-)
AMCG00005959 tnfaip8l1,LOC107702643,LOC107727554,LOC107733325 coding upstream 119380 12239333 ~ 12246234 (-)
AMCG00005961 ncln,LOC106573831 coding upstream 147132 12267085 ~ 12280796 (-)
AMCG00005919 NA coding upstream 205147 12325100 ~ 12326263 (-)
AMCG00005918 NA coding upstream 215364 12335317 ~ 12340498 (-)
G155058 NA non-coding downstream 63371 12003140 ~ 12023672 (-)
G155059 NA non-coding downstream 69677 12007468 ~ 12017366 (-)
G155003 NA non-coding downstream 154096 11932112 ~ 11932947 (-)
G154954 NA non-coding downstream 396995 11689740 ~ 11690048 (-)
G154909 NA non-coding downstream 472660 11613674 ~ 11614383 (-)
G155073 NA non-coding upstream 5208 12125161 ~ 12126128 (-)
G155183 NA non-coding upstream 327567 12447520 ~ 12447719 (-)
G155235 NA non-coding upstream 485770 12605723 ~ 12611445 (-)
G155284 NA non-coding upstream 626470 12746423 ~ 12746716 (-)
G155326 NA non-coding upstream 771154 12891107 ~ 12891358 (-)
AMCG00005875 NA other downstream 710505 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 726169 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 747908 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 761975 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 1221247 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 549303 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 558452 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 723812 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 776601 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 800170 12920123 ~ 12949967 (-)

Expression


Co-expression Network