AMCG00005896


Basic Information

Item Value
gene id AMCG00005896
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11932184 ~ 11935207 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005896
AGCGCAGCTCTCTCACTCCCAGCATGGCGTCTCTGTGTATCCTGGTGCTTTGCGGTGTGACTTCTGCACTTGCAGGTGTCTCTGGCGTTGAGACCATGGAGAAGCAGGAACTCCAGGGCCAGGGCCACGGCCGCCCCTACATGGCCTACCTTGTAGTTGGAAAAGAGAAGATCTCATCCAATTGTGGTGGCTTTTTGATCCGAGAGGACTTCATCTTGACTGCAGCACACTGCCAAGGAAAGCATTACCTTGCTGTGCTTGGGGCTAACAATATCATGGTAGATGAAGCAGCACAACAGTTGAGAAGAGTGGCAAAGGCTATCCCCCACCCCGATTACAAGGAATATGAGAATGACATCATGTTGCTAAAACTGAAACGTAGAGTTCTTCTGAATGAGAATGTGTCCGTGATTCCGTTGCCGTGGGAGGAGAAGATCGTGTCGCCGTCCACGGTGTGCTCTGTGGCTGGATGGGGGGGGGGCGACCAGGACACGAGGTATCTTTCTGACACACTGCGGGAGGTGAACGTGACAGTGTGGAGTGACACGTTCTGCAAAGAGCAATGGGAAGATGAGTACAATGACAGGAATATCTGCGCTGGCGATCCTGACCATGATGTCTGCAGGggagATGGTGGGGGTCCCCTGGTCTGTGATGGTGTGGTATATGGCATCGTCTCCAAAGCCAGCAGCAGGTGTGGACTGAAGCCAAGTATCTACACAAAGATCAGCAAATTTTTCCTATGGATCAATGAAACTCTGGCCAATAACTGAGCTTTACTTGCTTGTTTCAATACAGAGTACTGGTGCAGAGCTATGTGTCTTTCAATGGGCTTGACTTGCTACATTAATCTGAGTCTTGTTCTGCAGTCAGACTGAGCAGAGCTGCCTGTGACACGAGTTACTTGCTTATTTACTGATTTACAAATAATGCTTTCCTGAATATCTCCTTCTGTGCTCAGAATAAAGCTGCTTGACTTTAACTGTGGTGCTGATTTATCAACT

Function

GO: NA

KEGG:

id description
K01319 CTSG; cathepsin G

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005896 True 1004 mRNA 0.49 5 11932184 11935207

Neighbor

gene id symbol gene type direction distance location
AMCG00005883 celf5,LOC106956403 coding upstream 107547 11802432 ~ 11824637 (+)
AMCG00005864 NA coding upstream 240592 11690821 ~ 11691592 (+)
AMCG00005885 NA coding upstream 245409 11682809 ~ 11686775 (+)
AMCG00005866 NA coding upstream 369557 11558449 ~ 11562627 (+)
AMCG00005865 NA coding upstream 424747 11495141 ~ 11507437 (+)
AMCG00005898 NA coding downstream 642 11935849 ~ 11938386 (+)
AMCG00005897 NA coding downstream 17154 11952361 ~ 11972073 (+)
AMCG00005903 rnf126,LOC102780338,LOC107569633 coding downstream 61617 11996824 ~ 12003499 (+)
AMCG00005904 NA coding downstream 78321 12013528 ~ 12017391 (+)
AMCG00005902 LOC106526626,LOC106613751,LOC103357601,LOC101487604,LOC102789567 coding downstream 92474 12027681 ~ 12068052 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding upstream 20084 11906641 ~ 11912100 (+)
G154917 NA non-coding upstream 292258 11639686 ~ 11639926 (+)
G154916 NA non-coding upstream 293410 11638324 ~ 11638774 (+)
G154915 NA non-coding upstream 294165 11632091 ~ 11638019 (+)
G154908 NA non-coding upstream 317815 11613670 ~ 11614369 (+)
G155017 NA non-coding downstream 35617 11970824 ~ 12207954 (+)
G155018 fstl3 non-coding downstream 49456 11984663 ~ 11986924 (+)
G155053 NA non-coding downstream 266529 12201736 ~ 12203472 (+)
G155182 NA non-coding downstream 512273 12447480 ~ 12447684 (+)
G155207 NA non-coding downstream 610015 12545222 ~ 12585408 (+)
AMCG00005895 NA other upstream 26097 11903352 ~ 11906087 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 322033 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 522512 11406306 ~ 11409672 (+)
G154798 NA other upstream 570414 11319964 ~ 11361770 (+)
G154756 NA other upstream 846173 11083161 ~ 11086011 (+)
AMCG00005987 NA other downstream 756609 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 776571 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 958913 12894120 ~ 12895452 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 1090557 13025764 ~ 13033408 (+)
G155637 eps15l1,LOC107592720 other downstream 2162597 14097804 ~ 14098696 (+)

Expression


Co-expression Network