AMCG00005897


Basic Information

Item Value
gene id AMCG00005897
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11952361 ~ 11972073 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005897
ATGGAGCTCGgtgaacagaaaaacagaagaccCGCCATGCAGAGCAGAGCCTTGGGAGGCACCGGGCCGAGAGATGTCATGGTGGACGAGCAGAGTTCTGACCGGAGGGGACCGAGCAGGTCCTCTGGAATCGCAGAGTGTCACTTGCACCCCAACTTCTCCGAGGAGAACTATGACAATGATATCGCTCTGCTCAAGggggtggtggtgggcaTCACCTCCAGCCGTGGCAAGAAGTATGGCAAGCCCAAGAAGCTGGGCATGTACACGGTGGTCTCCCTGTACACCCAGTGGATTGACAGTGTCCTGCAACACTACCAGCTAGAATCCAGTGCAGCAGAAGAAACTACAGTGACAGGATCTAATTTTGAGGTCATGAAGGGAACAGCActtaAAGAGAATGTTTCTCTGAATAAGAACGTGGCCGTGATTCCGTTGCCGTGGAATCAGACGAGTGTGTCAGCGCACACAGAGTGCTCTGTGGCTGGATGGGGGGCAACGGACCCAGAAGGGAAACACAGTTCTAACACTCTGATGGGGggcGACTCCGGGGGACCTCTGGTCTGTGATGGGGTGGCATACGGCATCATCTCCAAAGGCAGCTCTACGTCTGTGGACGACTGGTCAGCAAAGACACTCCCCTACCTTCAGAAGCATGATGTCATCATTGAGTGCCTTCTGACAGCACAAGGGAAATGGAAACTTTCTGACCATTTTGATGATCTGCTGCaagggaaagagaaaggaaCAAACGGCGCCCTGATCATTGGCGGTAGAGCTGTGCTCCCGCACTCCCGGCCCTACATGGCGTCCATCCAGAAGAACGGCACTCACTTCTGCGGGGGCTTCCTGGTGGCCAAGCAGTGGGTGATGACGCCGTGCACTGCTTCACTGAGCCGTGAGTACAGACAGGGGCTGGAGCGTAGGAGCAGAGTTGTGCTGGGGGCCCATTCTCTCAGCAGACCGGAGGGGACCAAGCAGATCTCTGAAATCGCAGAGTGTCACCTGCATCCCCACTTCTCCGAGGAGAACTATGACAATGACATCGCTCTGCTCAAGGTGCAGCGGGGTGGGGGAAACCTCCCTGAGGGGCAGCAGTGCAGCACAGCCGGCTGGGGCTGGATCACCAACTACCACCGACTGCCCATGGTGCTGCAGGAGGTCTCCGTCACGGTCATCAGCCAGCACCTGTGCGGCCGCAGTGATTACTACGGAGACCAGCTCACCAGAAACATGATGTGTGCTGCCACGTGCCCCAGCAACTCGAGGAAGCTCTGCCAGGATGCCTGCAGGgGCGACTCTGGGGGTCCCCTCATTCACAAAGGGGTGGTGGTGGGCATCACCTCCACTGGTGGCAAGAAGTGTGGGAAGCCTAAGAAGCCGGGCGTGTACACGGTGGTCTCCCACTACACCCAGTGGATTGACAGCATCCTGCAACAAAGTAATGAATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005897 True 1452 mRNA 0.57 12 11952361 11972073

Neighbor

gene id symbol gene type direction distance location
AMCG00005898 NA coding upstream 13975 11935849 ~ 11938386 (+)
AMCG00005896 NA coding upstream 17154 11932184 ~ 11935207 (+)
AMCG00005883 celf5,LOC106956403 coding upstream 127724 11802432 ~ 11824637 (+)
AMCG00005864 NA coding upstream 260769 11690821 ~ 11691592 (+)
AMCG00005885 NA coding upstream 265586 11682809 ~ 11686775 (+)
AMCG00005903 rnf126,LOC102780338,LOC107569633 coding downstream 24751 11996824 ~ 12003499 (+)
AMCG00005904 NA coding downstream 41455 12013528 ~ 12017391 (+)
AMCG00005902 LOC106526626,LOC106613751,LOC103357601,LOC101487604,LOC102789567 coding downstream 55608 12027681 ~ 12068052 (+)
AMCG00005894 NA coding downstream 175419 12147492 ~ 12165856 (+)
AMCG00005892 fgf22,LOC106584266 coding downstream 198007 12170080 ~ 12171314 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding upstream 40261 11906641 ~ 11912100 (+)
G154917 NA non-coding upstream 312435 11639686 ~ 11639926 (+)
G154916 NA non-coding upstream 313587 11638324 ~ 11638774 (+)
G154915 NA non-coding upstream 314342 11632091 ~ 11638019 (+)
G154908 NA non-coding upstream 337992 11613670 ~ 11614369 (+)
G155018 fstl3 non-coding downstream 12590 11984663 ~ 11986924 (+)
G155053 NA non-coding downstream 229663 12201736 ~ 12203472 (+)
G155182 NA non-coding downstream 475407 12447480 ~ 12447684 (+)
G155207 NA non-coding downstream 573149 12545222 ~ 12585408 (+)
G155206 NA non-coding downstream 581352 12553425 ~ 12631371 (+)
AMCG00005895 NA other upstream 46274 11903352 ~ 11906087 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 342210 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 542689 11406306 ~ 11409672 (+)
G154798 NA other upstream 590591 11319964 ~ 11361770 (+)
G154756 NA other upstream 866350 11083161 ~ 11086011 (+)
AMCG00005987 NA other downstream 719743 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 739705 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 922047 12894120 ~ 12895452 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 1053691 13025764 ~ 13033408 (+)
G155637 eps15l1,LOC107592720 other downstream 2125731 14097804 ~ 14098696 (+)

Expression


Co-expression Network