AMCG00005898


Basic Information

Item Value
gene id AMCG00005898
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11935849 ~ 11938386 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005898
CCGCTTTGGCTGCTCGGACAGTTATCACACAGCATTTGAACTATGGTCTGGATCTGGTGTGCAGCAACGGGTTAGCCCTGAGCCCGGAGCAGAGCGCAGCTTTGCAGAGCTCTCTGCTGATACAAAAAGCTAATTATCAGTTCAATCGAGTTCAGTTTTAGGTCAAAATAATGTCAAAATAATGGCCTTAAACAGGACTATTTAATCGCACAGGGCTTTTCAGACGACGAAATGGGACATCGGAAGACCCTCTACAGCTTATTGTCCCCCCCAAGGTGTGGCCGAATGTGGCAGTCACCCAATCAGGATTTTCTCAGGAAAAATGATGGGGTTTCGGTTCTGCTTCCAGGATCATGGAGCCTGGGGTTTGAGAACGGCGTGATGGTCCTCAGGAGTTTGCTGTGGCTAGGTTTGACTTTCTACCAGGACCCAATGACACCAGCACATGGATTTGTGTACATGGAAACTGACCTGaagaattttaatttgattgtccTCTGTAGTTTGCTACCTTCACGCTGG

Function

GO:

id name namespace
GO:0003341 cilium movement biological_process
GO:0035082 axoneme assembly biological_process
GO:0031514 motile cilium cellular_component
GO:0005930 axoneme cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005898 True 522 mRNA 0.48 2 11935849 11938386

Neighbor

gene id symbol gene type direction distance location
AMCG00005896 NA coding upstream 642 11932184 ~ 11935207 (+)
AMCG00005883 celf5,LOC106956403 coding upstream 111212 11802432 ~ 11824637 (+)
AMCG00005864 NA coding upstream 244257 11690821 ~ 11691592 (+)
AMCG00005885 NA coding upstream 249074 11682809 ~ 11686775 (+)
AMCG00005866 NA coding upstream 373222 11558449 ~ 11562627 (+)
AMCG00005897 NA coding downstream 13975 11952361 ~ 11972073 (+)
AMCG00005903 rnf126,LOC102780338,LOC107569633 coding downstream 58438 11996824 ~ 12003499 (+)
AMCG00005904 NA coding downstream 75142 12013528 ~ 12017391 (+)
AMCG00005902 LOC106526626,LOC106613751,LOC103357601,LOC101487604,LOC102789567 coding downstream 89295 12027681 ~ 12068052 (+)
AMCG00005894 NA coding downstream 209106 12147492 ~ 12165856 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding upstream 23749 11906641 ~ 11912100 (+)
G154917 NA non-coding upstream 295923 11639686 ~ 11639926 (+)
G154916 NA non-coding upstream 297075 11638324 ~ 11638774 (+)
G154915 NA non-coding upstream 297830 11632091 ~ 11638019 (+)
G154908 NA non-coding upstream 321480 11613670 ~ 11614369 (+)
G155017 NA non-coding downstream 32438 11970824 ~ 12207954 (+)
G155018 fstl3 non-coding downstream 46277 11984663 ~ 11986924 (+)
G155053 NA non-coding downstream 263350 12201736 ~ 12203472 (+)
G155182 NA non-coding downstream 509094 12447480 ~ 12447684 (+)
G155207 NA non-coding downstream 606836 12545222 ~ 12585408 (+)
AMCG00005895 NA other upstream 29762 11903352 ~ 11906087 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 325698 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 526177 11406306 ~ 11409672 (+)
G154798 NA other upstream 574079 11319964 ~ 11361770 (+)
G154756 NA other upstream 849838 11083161 ~ 11086011 (+)
AMCG00005987 NA other downstream 753430 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 773392 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 955734 12894120 ~ 12895452 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 1087378 13025764 ~ 13033408 (+)
G155637 eps15l1,LOC107592720 other downstream 2159418 14097804 ~ 14098696 (+)

Expression


Co-expression Network