AMCG00005901


Basic Information

Item Value
gene id AMCG00005901
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11918788 ~ 11930850 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005901
AAGAGCCACAGCTTACtgtgaggggtgggggtggtacTTAAGCAGGGAGGCTGCACAGCTTTCCTCCAGTCATCCCGCTGACACCATGCCCTCTACCTGCATGCTGCTGCTGACCGTGCTCCTGCCTGCCCTGGCTCTCTCTGGCCACGTGGACTCTGGGATTGTGGGAGGGAGAACTGCCAAGCCACACTCCAGACCTTACATAGTCTCCTTACgggaaaataacaaacatgtcTGTGGGGGGTTCTTGGTGTCCCAATACTTTGTGATGACGGCTGCCCACTGCTTTCAATGggggaaacaaatagtggtggtggtgggcgCTCATTACATCAGCAAAGCAGAGGCATCAAAGATGATAGGTGTGCGATATTATCACATCTACCCAGGCTTCTCTAACACAACGCTGGCCAATGACATCATGCTACTGCAGCTGGAAAGAGCCGTTTTCCCCACCAAAGAAGTGAAGTGGATCGACCTCCCGAAAAGAGACAATGATGTCAAGGACAAAACAGTGTGCAGTGTCGCTGGATGGGGGGCTACGGAAACGCACGGTCGCGCCAGCCCTCAGCTCCAGGAGGTGAACGTAACCATCGTGGGCAGGAAATCCTGTGAAAAGGAGTGGAAGAAAACATTGACTGCAGGGATGATGTGTGCAGGGGGCAGCGCAGATAACAAAGGGTTCTGTCAGGGGGACTCCGGTGGACCGTTGGTGTGTAAGAAAACTGCGGTGGGAATTGTGTCTTTCAATGAGAAGGGTAACTGTAATAAGCCTCAATGCCCTAATGTCTACACCCAGGTGTCTAAATATTTGCCCTGGCTGAAGAAACCTATTAAAGAGAGCAAGAACGTGAACTGGATCAAACTGCCCAAAAAGGACAAGGACATCAGGGACAAGGAGTGTACTGTCGCTGGATGGGggctacaaaaacaaatgcatcctCCAGCTCACGCCTCCTTTGATTCTGAGATAATCAATGGGAAAGTGGCTAAGAAGAACTCCCTGAAGTACATGGCATCTGTACAAGTCAATGGGAAACATCACTGTGGAGGATTTCTGGTATCAAAAAAATTTGTGATGACTGCTGCCCACTGCTACAAGGGTGAGAAGATGAATGTGGTCCTTGGAGTCCACGACTTGGAGTCCACAAAGAAAggtaaaaatataaagaagTTCATAGTGAAGAAAGAATACAGACACCCAGAATACAAAGACTTGAAATCTGGCCATGACATCATGCTCCTTCAGCTGTCAGAAACAGTGAAATTAGGCAAGAACTTGGAAGTGGTAATGCTTCCTCAGAAAGACGTAGAGTTGAAGCCGAACAGCGAGTGCATCGTCGCGGGCTGGGGTGCCATTCAGAGTGGAAAAACGTCAGTGGCCAATCTCCGCGTTGTCAACGTAACAACTATTGACAACAAGGTCTGCCAGAAAGAATGGGCAAGGTTTCTAAAACTCCCACAAAACATCCTCTGTGCTGGGGGCTTTGGCACCAAAAATGGAGCCTGTCAGGGTGACTCCGGGGGTCCTCTGGTGTGTAGGGGTGTGGTGTCCGTTGAGACCCTCAGCTGTGGCCAAGGAGAGATGTGCTCCGCCGCTATTCTGTGCTGCTGCATCGCGCTGTTTGCTCTACATGGTGGAGCATCCCAGGTTGGCATTATTGGAGGCCAGGAGGCTTCACCTCATTCAAGACCCTATATAGCCTCCCTCCAGCTAAATGGCCAGAACTTCTGCGGGGGGGTGCTGGTGAGGGAGGATTTTGTGCTGACAGCTGCACACTGCCAAGGGCAGCAACAAGTGGTCCTAGGGGCTCACTCACTGGGTACCAAAGAGGACACACAGCAGGTGTTCAGGATAAAATATTCCTTCCCCCACCCCAAATACACCGACCAGTCAGTGGACCATGACATCATGCTGCTGAAGCTGGACAGGAAAGCAACCCTGAACTCGTCTGTGAAAATCATCCGCATGAAACTCAGGGGGCGAGTGAGGCAGGGCACGGTTTGCAGTACCACCGGCTGGGGGGACATCTTTGACAACTTCACGGCCTCCGACGTACTGCGGGAGGTCAACACCACCGTCATCAGCCAGAGAGCCTGCAAAAGCCGTTGGGCTCAGGCCATCACCATCACCAATACTATGATATGCGCCACCGACCACGGGCAGTTCGAGGGCTTCTGCTCGGGAGACTCTGGTGGCCCCCTGGTGTGCAGTGGCGAGACGGTGGGGGTCGTTTCCTTCTCGAGCAGGAAGTGTGGCGACCCCAAATACCCCGATGTCTACACCCGCATTGCCGGCTACAGGACATGGATTCAGAAAGTCCTGAAAGAGAATTAAACCAACTGAATATCTGCCAGCTCTGAtagtttgtctgtctgtttctctctctcatttaagTTAATCTGCGCAACACCAAAtctgtactactactactaataatattaaaaatagtagTGAAATGTGGTCTTCATTGCACATGCAGTCcttttgtatgtttgctttCCAGCTATTcaattaaagcaatttaaataaatagttcatcTGGGCTGCTGCTCATTGCA

Function

GO: NA

KEGG:

id description
K08663 GZMK; granzyme K

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005901 True 2562 mRNA 0.51 15 11918788 11930850

Neighbor

gene id symbol gene type direction distance location
AMCG00005899 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700,LOC104964522 coding downstream 723 11906566 ~ 11918065 (-)
AMCG00005900 NA coding downstream 16398 11897018 ~ 11902390 (-)
AMCG00005884 rgma,LOC103371300 coding downstream 55750 11838001 ~ 11863038 (-)
AMCG00005889 NA coding downstream 237966 11675135 ~ 11680822 (-)
AMCG00005891 NA coding downstream 244436 11670353 ~ 11674352 (-)
AMCG00005905 NA coding upstream 53813 11984663 ~ 11993731 (-)
AMCG00005893 polrmt,LOC102781777,LOC103149847,LOC101483880,LOC106937851 coding upstream 156193 12087043 ~ 12119953 (-)
AMCG00005960 NA coding upstream 263730 12194580 ~ 12212371 (-)
AMCG00005959 tnfaip8l1,LOC107702643,LOC107727554,LOC107733325 coding upstream 308483 12239333 ~ 12246234 (-)
AMCG00005961 ncln,LOC106573831 coding upstream 336235 12267085 ~ 12280796 (-)
G154954 NA non-coding downstream 228740 11689740 ~ 11690048 (-)
G154909 NA non-coding downstream 304405 11613674 ~ 11614383 (-)
G154906 NA non-coding downstream 305177 11569273 ~ 11613611 (-)
G154848 NA non-coding downstream 502400 11415817 ~ 11416388 (-)
G154817 NA non-coding downstream 598804 11309698 ~ 11319984 (-)
G155003 NA non-coding upstream 1262 11932112 ~ 11932947 (-)
G155058 NA non-coding upstream 72290 12003140 ~ 12023672 (-)
G155059 NA non-coding upstream 76618 12007468 ~ 12017366 (-)
G155073 NA non-coding upstream 194311 12125161 ~ 12126128 (-)
G155183 NA non-coding upstream 516670 12447520 ~ 12447719 (-)
AMCG00005875 NA other downstream 542250 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 557914 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 579653 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 593720 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 1052992 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 738406 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 747555 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 912915 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 965704 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 989273 12920123 ~ 12949967 (-)

Expression


Co-expression Network