AMCG00005904


Basic Information

Item Value
gene id AMCG00005904
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12013528 ~ 12017391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005904
ATGAAACTGACCGAGGACAGTGCTGAGCTGCACTGCGAGGTCATTGGGAACCCCATCCCCGAGGTCCAGTGGTGGTTTATTGAGGGGGAGGATACGGAGGAGACGTTCACTCAGCTGTTTGACGGCGCTCGGCAGGAGCGTGTCCAGATCAACGCCACCTACATCCTCCACGCCACCAGCGCCATTTACTTCACTAATCTCACGCTGAACGACTCCGGCACCTATGAGTGCCGCGCCTCCAACGACCCCGACCGCAACGACCTGAAGAAGACCCCCAAAATCAAGTGGATCCGCTCGCAGGCGAACATAATTGTGTTTGAACCTCCTGAGATCGTGACCTTTCCTCTGGAGGCAAGCAATATCTCTTCCACCGTTCTGTCCTGCAACATGACAAACCCCCCAAATGAAATTAAAGGTCGTTACTGGGTAAAGAACGGCAAAGAGATTAAGGACACCAAGGACCAAAAGAGTGATCCCTTCATGAAGCTTGAGCTAAAGAATCTTAATCCTGAAAATGGAGGGATCTATACCTGTGTGTATCTCATCACCCCTGAAGCCAACAAAAGCATTGAAGTCAAAATGCCCCCTCATGTTAAAGCATACAAGCACTCTGAGCATGGAAATGAGCAGGACAAAGGTGTGCTCACCTGTGTAAGCCATGGCTATCCCCTGCCAACATCCTGGATGTGGTTCAAAAATGGTGCAGAAACACCCATTAATGGAACAGCGGGAAAGTACGAGATCAAGAGCACCCCGGAGAAGACCATCCTGTACATCGATAACTTGGACATGGAAGACGATATGGGTGACTACGAGTGCGTCGGCGAGAACGACATCGGCTTGAACCGCGACAAGATCCACTTGCGTGTGCGCAGCCGCCTCGCCGCCCTGTGGCCCTTCCTTGGCATTGTGGCAGAGGTCATCATCCTGGTCACCGTTATCTTCATCTACGAGAAGAGGCGAAAGCCCGATGAGATTGTGGACGGTATGAGCATTGCTTCCCTCTAA

Function

GO: NA

KEGG:

id description
K06535 BSG, CD147; basigin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005904 True 1008 mRNA 0.52 5 12013528 12017391

Neighbor

gene id symbol gene type direction distance location
AMCG00005903 rnf126,LOC102780338,LOC107569633 coding upstream 10029 11996824 ~ 12003499 (+)
AMCG00005897 NA coding upstream 41455 11952361 ~ 11972073 (+)
AMCG00005898 NA coding upstream 75142 11935849 ~ 11938386 (+)
AMCG00005896 NA coding upstream 78321 11932184 ~ 11935207 (+)
AMCG00005883 celf5,LOC106956403 coding upstream 188891 11802432 ~ 11824637 (+)
AMCG00005902 LOC106526626,LOC106613751,LOC103357601,LOC101487604,LOC102789567 coding downstream 10290 12027681 ~ 12068052 (+)
AMCG00005894 NA coding downstream 130101 12147492 ~ 12165856 (+)
AMCG00005892 fgf22,LOC106584266 coding downstream 152689 12170080 ~ 12171314 (+)
AMCG00005958 NA coding downstream 160849 12178240 ~ 12190647 (+)
AMCG00005955 LOC107733348 coding downstream 196238 12213629 ~ 12220522 (+)
G155018 fstl3 non-coding upstream 26604 11984663 ~ 11986924 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding upstream 101428 11906641 ~ 11912100 (+)
G154917 NA non-coding upstream 373602 11639686 ~ 11639926 (+)
G154916 NA non-coding upstream 374754 11638324 ~ 11638774 (+)
G154915 NA non-coding upstream 375509 11632091 ~ 11638019 (+)
G155053 NA non-coding downstream 184345 12201736 ~ 12203472 (+)
G155182 NA non-coding downstream 430089 12447480 ~ 12447684 (+)
G155207 NA non-coding downstream 527831 12545222 ~ 12585408 (+)
G155206 NA non-coding downstream 536034 12553425 ~ 12631371 (+)
G155304 NA non-coding downstream 873695 12891086 ~ 12891396 (+)
AMCG00005895 NA other upstream 107441 11903352 ~ 11906087 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 403377 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 603856 11406306 ~ 11409672 (+)
G154798 NA other upstream 651758 11319964 ~ 11361770 (+)
G154756 NA other upstream 927517 11083161 ~ 11086011 (+)
AMCG00005987 NA other downstream 674425 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 694387 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 876729 12894120 ~ 12895452 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 1008373 13025764 ~ 13033408 (+)
G155637 eps15l1,LOC107592720 other downstream 2080413 14097804 ~ 14098696 (+)

Expression


Co-expression Network