AMCG00005905


Basic Information

Item Value
gene id AMCG00005905
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11984663 ~ 11993731 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005905
GCGAGCTCAGCCATCAGCAAAACCAACAGGCCGGACTTGAACCGTTATACGGGCTGCCGTTTGGGTCCTGTTCATccaacagagaaagaaagggctATCAGGACATCGCTGGCAGTTTACTACAAACTACTTAAGAATACTTCATATATTTCACTTCTTACAAATAATCAGTTGATAAATATTAGTGTCCAGTGCTTTACAACATGAGTATTTTAATGGCCGTTAATATTGTGATTTTCGTCGCCTGGTGGGAGATTATTGGACGTTGCCCTGCGAATGcggGGATGTGCTGGCTGCAACAGGCCAAGGAGCCACGCTGTGCCATGGTGCTGATGAGGGGGGTGACCCGCGAGGAGTGCTGTGGCAATGGGAGTCTGGATACAGCCTGGTCCAACAGCACACTGCCCATCAACGAGGTTAGCCTGCTGGGCTTCCTGGGGATCGTATCGTGCAAGCCATGCAAAGAGACGTGTGACGGGGTGGACTGCGGCATTGGCAAGGTGTGCCGGATAAAGAATGGCCGTCCGCATTGCGCCTGCAACCCTGACTGCTCCAACATCACGCGCAGGCAGCCCGTATGCGGCGCTGACGGACACACCTACCGGGACGAGTGCGCGCTCCTATTGGCCAGGTGCCGGGGGCAGCCCGACCTGGAGATCATGTACCAGGGAGAGTGCAAAAAGTCCTGCTCCAACGTGGTGTGCCCGGGCACTCATACCTGTGTGACAGACCAGACCGACAGCGCCCATTGCGTCATGTGTCGCACGGCCCCCTGCCCCCCGCCCATGGCATCTGAGCAGCCCATCTGCGGCAACGACAACATCACCTACCCCAGCGCCTGCCACCTGCGACGGGCAACCTGCTTCCTGGGCAGATCCATCGGCATCCGCCACTATGGCTACTGCACACATGTACCGAAACATGCCCTGGGCCGAGATGAGAGCGAGGAAAACTCGGTGTAGGAAGCGCTACCCCAGCAGAGAGGCGAGTCCTTGACTTAGGTCAGATGACTGAGATTTTTCTGAAGACCAGGAACAAAGGGAAAGCAGATGGACgaagtcagacagacagacacacacccacctATCTGTTGCACAATAATGAGAGTAGAGGATCTGATTCTTCCAAGTAATAGATAAATAACcgcacttgttttaaaaaagggaGATCCAATTACAGGTCACTTTACAACCCAGTTAAGAATAAGATACCAAGATAATTATAAGTACCAGATTGAAGAACCTACATTTTTTTCAGGGTGAGATGTTATCAGAAAAGAATTGCTGCCATCTTTCATTTCCAACATTGATAGTTTTGATTTCCCAAGAAACGGAGGCCTATATTAGGGACCAGCCGAGCAGAAGAGGGACGAAGGTGGCTTGAAATGtgaatattgtaaataaaacccCACGGATATTTATTGGAgcaaaaattatgaaaaaccatttgtatttgtatattgttgtttttcatgtataCGAATCACACCCTCTTTTTTTAGagctatatttattacatttttctcatgtttttgattttgtttttttctgtgctgtgttCATAAAGCTctcaaaaatgtatatcaaaatgttttacattaataattaaagtaaaacagaaatataccAATCAGGTcaattattaattgtttaatttcaatttgaTGATACGGACAGTTAGTGTTCAGAAAACGGGGAACCACAATGATTTAGGATTAAAAAACAGTGTGACCCTTCTTGAGTTTATTAATATTCTAATATTTAGAAAGTAGAATTTGAGTTTTTAATGATACATACAATTTTGCCATACTGTCTCAAACCATGGACAGCTTAATAGAGAGAGATTCTCTGCATTACACTGGGGCTACCTCAACCTTCATCTCCTACAGTTCTCACTTCTTAATTAAGTATTTGGTAATGTGCCAAACTacatgttttttacattttgtattaatagttCTTAATGAAGACTGTTAAGACTTGAGCTGCAGTCCACCACTTCAATCGAACACTCAATCGAATTGATCAAACTGCAATCAAATTCCAACCCAAACCGCAAAGACGTAGGAGTTTTTATCAGCCAGGCAGTGTCCCACCGATTGCTATCTTTGTTTGTCCTCTATccacataaatatattataatcttTAGATTGGGgagaaatcatatttttcatatgttcCTTATCAGCTCTTTACagatttaagattttaatttccCTTCTTGTTAAATAAATTCCAGTGTTATTTGGAAACATCTTATTTAATGGAGGAATTCCCCTTTTtctaaactgatttaaaaatacatgctgctcattttatttgtttttgaatggaaAAGGATTTTATATCTGTATGtaaaaaacacactgaacacaattTGGActtcctttaaattaaaatatttattgagaAGAAAACGTATGTGATTTGAATTTGTGACGCTAATTTCATTAACTGTGTTCATGTGTGACATGGATAATGAATTCTAATCTACTGTTTCTTGTAATGTGTTGTGCTATAACCTATATTATACCTGCTTGTAAATAGAACTGTATTTACCATGAGACTGAATTTCCAAATGTACGTATcaacttatttttgtatttttgtactgcTATTTTATCCCAACATAAACCTCTTTGTCATGAT

Function

GO: NA

KEGG:

id description
K23913 FSTL3; follistatin-related protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005905 True 2648 mRNA 0.42 5 11984663 11993731

Neighbor

gene id symbol gene type direction distance location
AMCG00005901 NA coding downstream 53813 11918788 ~ 11930850 (-)
AMCG00005899 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700,LOC104964522 coding downstream 66598 11906566 ~ 11918065 (-)
AMCG00005900 NA coding downstream 82273 11897018 ~ 11902390 (-)
AMCG00005884 rgma,LOC103371300 coding downstream 121625 11838001 ~ 11863038 (-)
AMCG00005889 NA coding downstream 303841 11675135 ~ 11680822 (-)
AMCG00005893 polrmt,LOC102781777,LOC103149847,LOC101483880,LOC106937851 coding upstream 93312 12087043 ~ 12119953 (-)
AMCG00005960 NA coding upstream 200849 12194580 ~ 12212371 (-)
AMCG00005959 tnfaip8l1,LOC107702643,LOC107727554,LOC107733325 coding upstream 245602 12239333 ~ 12246234 (-)
AMCG00005961 ncln,LOC106573831 coding upstream 273354 12267085 ~ 12280796 (-)
AMCG00005919 NA coding upstream 331369 12325100 ~ 12326263 (-)
G155003 NA non-coding downstream 51716 11932112 ~ 11932947 (-)
G154954 NA non-coding downstream 294615 11689740 ~ 11690048 (-)
G154909 NA non-coding downstream 370280 11613674 ~ 11614383 (-)
G154906 NA non-coding downstream 371052 11569273 ~ 11613611 (-)
G154848 NA non-coding downstream 568275 11415817 ~ 11416388 (-)
G155058 NA non-coding upstream 9409 12003140 ~ 12023672 (-)
G155059 NA non-coding upstream 13737 12007468 ~ 12017366 (-)
G155073 NA non-coding upstream 131430 12125161 ~ 12126128 (-)
G155183 NA non-coding upstream 453789 12447520 ~ 12447719 (-)
G155235 NA non-coding upstream 611992 12605723 ~ 12611445 (-)
AMCG00005875 NA other downstream 608125 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 623789 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 645528 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 659595 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 1118867 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 675525 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 684674 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 850034 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 902823 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 926392 12920123 ~ 12949967 (-)

Expression


Co-expression Network