AMCG00005907 (LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791)


Basic Information

Item Value
gene id AMCG00005907
gene name LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 11406306 ~ 11409672 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005907
GCGGGCCGTTTGAGTTTAAATCTGGATCCGCGCTGGGTGACATTTGTGGAGACTGAGAGGAGAAACAAACCCGCCAAGAGAGTGAGTGCAGAAGAGTGAGACCTGAACCCGATAGAGAAGCCGGCTGAAACAtctctgaaacaaacaaacaatgtcgAAGAAACAGATCTACTACTCCGACAAATACACGGACGAGGAGTTCGAGTACAGGCATGTTATGCTGCCGAAGCAGCTTTCCAAACTAGTGCCCACCTCTCATCTGATGTCTGAGGACGAGTGGCGCACCCTGGGTGTCCAGCAGAGCCAGGGCTGGATACATTATATGATCCACAAGCCAGAACCGCACATACTGCTGTTCCGAAGGCCTCTCCCAAAAGAGTGAAAGGCGACGGGAAAGACCCAGACTTGGAACGTTTCTCCTTCAATTCCAGCAGCAAATTCAATAATCTGAACCGAGCGCATGAATGTATGGCTTCATATGTGAGTGTTTTGATTGATATCACGTCAGATTTTGTGGTCCTGTGAAAAGCCCCGAGACGGACATCCCGAAAAAATCTGGCTAATCGctaataatcaaaaataaaacaaaaaactgcggCCCGCACAACTGAGCGAGTGTAGAAGAAGGAGAAGCCACTCCCTCCTGGGTTGGTAGGAAAGTTCCTCGGCTGTAGTAATGAACCTCAGATCTGGAAAGCAGGACTAAACGCACTGCGTCTCATTCAGAGAAGTCCTTGGGGTATTCTGGTCTCTCCCAAAGCATGACTTCCTTTTCTCTCAAGATCTTTTTGATTCCGAATGTTATCCTTTCAGTTAAACTATACTGTGGAGGGGGATGAGAGAAACCGGCCTACAGAAAAATGATCCAGTCACAAATCTTAAAAGTTATAAAAAGAGTTTGCAAAATGTGGTTGGTTGAtggctgcttaaaaaaaaatactggttCAGTTTTCTGACCCACCAGCTTGTTTTCTGTCTAGTGAGGAGTATATTCGATGAGGGTGGCGCTTGGATCTGTGGCTGAGGCAgtttgtttaaaacacattttatttacaagttTCTTAGGAAAACAGTCGAGGGATCCAGGATCTAGCCTATACAGAGTTAATCTACAGACTCGTGTCCCTGACAGCatctctcttgctctttctGCGAAGAAAAATTAGAATGTCACATTTGAAGAAGAAATTGCTCCAaacatatttacttatttgtttcacatttaatttatcgATAATGAACGTACACAATTGTGGCTTCACACCCATGTGGTACTTGCAAAGGTTAAAAAGCAAGCAAGCTTTCACAGGCTAGATTTGATAGCTGCACTCAGTAGTTGGTGACCGCACATGTTTACTGTTCTTCACAGTGGCTCGAGTGCTGTCAGTGACAGGTTTGTAGATTGACTCTTCAGGCTCTACTCTGCAGATGCTTTGAACAGTGCAGTGTGGCAAACAGATGCTGTAGATGTGATGGAGACTCTAGGCCGGTTGCAGCACTTTGACATTTTAAGTAGACTACTAAAAGGTGTGATTTATAGTGGAAATCATCAATCCTGTAGTtcagggattcccaaaccggtcctggaggaccccctgtcccaactgagatcttaattgcttaatttaatccttaattgaaggaacaatgcaatataaggctcaGTTATGTAATAAGGAGCTCGGTTggcacaaaaaacagcaggacagggcagggggtcccccaggatggtttgggaatccctgctgtAGTTAAAAGCTTGTAGTCTTGTAAAATAAGCCCTATTTCACTTGGTTTCTTCTTATTCATACTTATTGCATACGTGTGTTCTGTGTATACCTTTTCTTTTACTTGTTCCATTtcatgaatgtgtttgtttttgttcctccaCAAAAAGTCTGTCTTTAGAGCTGCATTTCTGAAGTAGTTTCAACCCAGATATTTCCagtaggtatttatttattttagtcactAACAGCTCCTTACTTGATGCACTACGTTTAACTCGCCTGGTGTTGACATCTTGTtcagttatttgtgttttttgtttttgtaacccttgtatatattgtaatgccAAATGGCTGCTTTATTGCTTTGTTGATTTCCTTGTTGTATTCAATATAAACTGTTGTAGCCAAACCTTTTGTGGTTGATTGTTCAGTGTAAATgtcttatttatattaattccTTTAAATATGCAGGACTTGTATGTTAAATTTAATTGTGGCATAATATGGTAAGGTTGTTATTTTGGGTGATCAGTTCCTGTCAGTGGTAAGAGAAATgtaactttgtgtgtgtgaaagtataAACAGAGGGAGGAGCTGCACAAGCGATAAAACGGCCTGGTGAAACTCAACCGTTCGGAAGCTACAGCTGAAAGCCACACTGGTATTGTT
>TU195034
GAGAGGAGAAACAAACCCGCCAAGAGAGTGAGTGCAGAAGAGTGAGACCTGAACCCGATAGAGAAGCCGGCTGAAACAtctctgaaacaaacaaacaatgtcgAAGAAACAGATCTACTACTCCGACAAATACACGGACGAGGAGTTCGAGTACAGGCATGTTATGCTGCCGAAGCAGCTTTCCAAACTAGTGCCCACCTCTCATCTGATGTCTGAGGACGAGTGGCGCACCCTGGGTGTCCAGCAGAGCCAGGGCTGGATACATTATATGATCCACAAGCCAGAACCGCACATACTGCTGTTCCGAAGGCCTCTCCCAAAAGAGTGAAAGGCGACGGGAAAGACCCAGACTTGGAACGTTTCTCCTTCAATTCCAGCAGCAAATTCAATAATCTGAACCGAGCGCATGAATGTATGGCTTCATATGTGAGTGTTTTGATTGATATCACGTCAGATTTTGTGGTCCTGTGAAAAGCCCCGAGACGGACATCCCGAAAAAATCTGGCTAATCGctaataatcaaaaataaaacaaaaaactgcggCCCGCACAACTGAGCGAGTGTAGAAGAAGGAGAAGCCACTCCCTCCTGGGTTGGTAGGAAAGTTCCTCGGCTGTAGTAATGAACCTCAGATCTGGAAAGCAGGACTAAACGCACTGCGTCTCATTCAGAGAAGTCCTTGGGGTATTCTGGTCTCTCCCAAAGCATGACTTCCTTTTCTCTCAAGATCTTTTTGATTCCGAATGTTATCCTTTCAGTTAAACTATACTGTGGAGGGGGATGAGAGAAACCGGCCTACAGAAAAATGATCCAGTCACAAATCTTAAAAGTTATAAAAAGAGTTTGCAAAATGTGGTTGGTTGAtggctgcttaaaaaaaaatactggttCAGTTTTCTGACCCACCAGCTTGTTTTCTGTCTAGTGAGGAGTATATTCGATGAGGGTGGCGCTTGGATCTGTGGCTGAGGCAgtttgtttaaaacacattttatttacaagttTCTTAGGAAAACAGTCGAGGGATCCAGGATCTAGCCTATACAGAGTTAATCTACAGACTCGTGTCCCTGACAGCatctctcttgctctttctGCGAAGAAAAATTAGAATGTCACATTTGAAGAAGAAATTGCTCCAaacatatttacttatttgtttcacatttaatttatcgATAATGAACGTACACAATTGTGGCTTCACACCCATGTGGTACTTGCAAAGGTTAAAAAGCAAGCAAGCTTTCACAGGCTAGATTTGATAGCTGCACTCAGTAGTTGGTGACCGCACATGTTTACTGTTCTTCACAGTGGCTCGAGTGCTGTCAGTGACAGGTTTGTAGATTGACTCTTCAGGCTCTACTCTGCAGATGCTTTGAACAGTGCAGTGTGGCAAACAGATGCTGTAGATGTGATGGAGACTCTAGGCCGGTTGCAGCACTTTGACATTTTAAGTAGACTACTAAAAGGTGTGATTTATAGTGGAAATCATCAATCCTGTAGTtcagggattcccaaaccggtcctggaggaccccctgtcccaactgagatcttaattgcttaatttaatccttaattgaaggaacaatgcaatataaggctcaGTTATGTAATAAGGAGCTCGGTTggcacaaaaaacagcaggacagggcagggggtcccccaggatggtttgggaatccctgctgtAGTTAAAAGCTTGTAGTCTTGTAAAATAAGCCCTATTTCACTTGGTTTCTTCTTATTCATACTTATTGCATACGTGTGTTCTGTGTATACCTTTTCTTTTACTTGTTCCATTtcatgaatgtgtttgtttttgttcctccaCAAAAAGTCTGTCTTTAGAGCTGCATTTCTGAAGTAGTTTCAACCCAGATATTTCCagtaggtatttatttattttagtcactAACAGCTCCTTACTTGATGCACTACGTTTAACTCGCCTGGTGTTGACATCTTGTtcagttatttgtgttttttgtttttgtaacccttgtatatattgtaatgccAAATGGCTGCTTTATTGCTTTGTTGATTTCCTTGTTGTATTCAATATAAACTGTTGTAGCCAAACCTTTTGTGGTTGATTGTTC

Function

NR:

description
PREDICTED: cyclin-dependent kinases regulatory subunit 1

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function

KEGG:

id description
K02219 CKS1; cyclin-dependent kinase regulatory subunit CKS1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005907 True 2402 mRNA 0.42 3 11406306 11409672
TU195034 False 2108 lncRNA 0.42 3 11406360 11409432

Neighbor

gene id symbol gene type direction distance location
AMCG00005874 plekhj1 coding upstream 62702 11339604 ~ 11343604 (+)
AMCG00005873 NA coding upstream 75185 11324831 ~ 11331121 (+)
AMCG00005853 LOC104941186,LOC107581323,LOC107678192 coding upstream 162508 11242839 ~ 11243798 (+)
AMCG00005854 LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969 coding upstream 199717 11205387 ~ 11206589 (+)
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding upstream 234232 11171014 ~ 11172074 (+)
AMCG00005906 clg08h19orf60,cssa23h19orf60,LOC108439285,LOC107729673,LOC107676986,LOC103025814,LOC107593355 coding downstream 47826 11457498 ~ 11460743 (+)
AMCG00005908 NA coding downstream 68023 11477695 ~ 11486383 (+)
AMCG00005865 NA coding downstream 85469 11495141 ~ 11507437 (+)
AMCG00005866 NA coding downstream 148777 11558449 ~ 11562627 (+)
AMCG00005885 NA coding downstream 273137 11682809 ~ 11686775 (+)
G154831 NA non-coding upstream 27017 11378780 ~ 11379289 (+)
G154816 NA non-coding upstream 35394 11370424 ~ 11370912 (+)
G154815 dot1l non-coding upstream 44073 11362005 ~ 11362233 (+)
G154775 NA non-coding upstream 226069 11174395 ~ 11180237 (+)
G154722 NA non-coding upstream 406917 10997649 ~ 10999389 (+)
G154847 NA non-coding downstream 6393 11416065 ~ 11416329 (+)
G154863 NA non-coding downstream 39808 11449480 ~ 11465625 (+)
G154879 NA non-coding downstream 76820 11486492 ~ 11488514 (+)
G154908 NA non-coding downstream 203998 11613670 ~ 11614369 (+)
G154915 NA non-coding downstream 222419 11632091 ~ 11638019 (+)
G154798 NA other upstream 44536 11319964 ~ 11361770 (+)
G154756 NA other upstream 320295 11083161 ~ 11086011 (+)
AMCG00005840 LOC100304646,LOC107384145 other upstream 395952 11006798 ~ 11010354 (+)
G154636 LOC108435919,LOC108271001 other upstream 490577 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 669680 10721752 ~ 10736626 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 192230 11601902 ~ 11610151 (+)
AMCG00005895 NA other downstream 493680 11903352 ~ 11906087 (+)
AMCG00005987 NA other downstream 1282144 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 1302106 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 1484448 12894120 ~ 12895452 (+)

Expression


Co-expression Network