AMCG00005919


Basic Information

Item Value
gene id AMCG00005919
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12325100 ~ 12326263 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005919
ATGGAAATCCTCCACTCTCTTAATTCTCCCAGCTCCTGCCCGGAGACCTACTCTTGGACCAATGGCAACGTGATCCTGGAGCACTACAACTACACGGGCCGCCTGGAGAACCGGCACAGAGACAACCGGAGCTTCAGCGGGGTCAAGGTGGCCTTCACCTTCATCAGCACCTGCATCATCCTGGAGAACCTGATCGTGCTGCTGGCCGTCCTGGTCCACCTCCGCTTCCGCAGCTGGGTCTACATCTGCATCGTCAACATCACCCTGAGCGACCTGCTGGCCGGCGTCGCCTACGTGGTCAACCTGTTCCTGTCCGGGAGGATGACCTTCCAGCTGACTCCCAATGTGTGGCTCTTCAGGGAGGGCGTGCTGTTCGTGGCCTTGGCAGCGTCCATCTTCAGCCTGCTGCTGACGGCGGTTGAGCGCTATGTCACCATGATGAACCCCACGCTGTACAAATCCACCAGCAAGTCCTGCCGGGTCTACACTCTAGCGGCCCTCTGCTGGGTGGCTGCCTTCATCATCGGCTTCCTCCCGCTGCTGGGCTGGAACTGCCTCTGCAATCTGGAGAACTGCTCCACCCTCCTCCCGCTCTACTCCAAGAGCTACATCCTCTTCTGCGTGGTCATGTTCAGCCTCATCCTTGCCGGCATCTGGTTCTTGTACTACTCCATCTACCGCCACGTCAAGACCAGCACAGAGAAGAGCTCCACGCGCAGCCGGACGAAGTCCTTCCGGCTCCTCAAGACCGTGGTGCTCATCGTGGGGGCTTTTGTCGTCTGCTGGGGCCCCCTGTTCTGCCTCCTACTCATGGACGCCTTCTGCAGTTCAGCTAAGTGCAGCCAGCTCTACAGCATGGACTGGCCCATCGCCCTGGCGGTCCTCAACTCAGCCATCAACCCCATCATCTACTCCTTCGGCAGCATGGATGTGCGCAAGGCCATCGTGAACatcctgtgctgctgctgtttcaaGACAGGCCTGTGCGATATCGCCAGCATCATGTCCGTCGAGACAGGGAACTCCTCCGAGAGCTCCCTGAGACACAATAGCATCCGGAACAGTTTCCGCAGAGCCTCGAGTCTCAGCCCCACACCCTCCACCAAAACCAAGAAGATCCGCCTCAGTTCCACCACCTCTTGTCTGTCCGTGTCGAGCTGTTAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04293 S1PR4, EDG6; sphingosine 1-phosphate receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005919 True 1164 mRNA 0.59 1 12325100 12326263

Neighbor

gene id symbol gene type direction distance location
AMCG00005961 ncln,LOC106573831 coding downstream 44304 12267085 ~ 12280796 (-)
AMCG00005959 tnfaip8l1,LOC107702643,LOC107727554,LOC107733325 coding downstream 78866 12239333 ~ 12246234 (-)
AMCG00005960 NA coding downstream 112729 12194580 ~ 12212371 (-)
AMCG00005893 polrmt,LOC102781777,LOC103149847,LOC101483880,LOC106937851 coding downstream 205147 12087043 ~ 12119953 (-)
AMCG00005905 NA coding downstream 331369 11984663 ~ 11993731 (-)
AMCG00005918 NA coding upstream 9054 12335317 ~ 12340498 (-)
AMCG00005917 hiat1a,mfsd14a,LOC108413745,LOC107738165,LOC107659405,LOC102785602 coding upstream 22982 12349245 ~ 12362876 (-)
AMCG00005916 NA coding upstream 39469 12365732 ~ 12410193 (-)
AMCG00005923 LOC103464111,LOC103138520,LOC102237431,LOC107100952,LOC103373679,LOC105900972,LOC100702697 coding upstream 302453 12628716 ~ 12642191 (-)
AMCG00005988 NA coding upstream 336089 12662352 ~ 12665106 (-)
G155073 NA non-coding downstream 198972 12125161 ~ 12126128 (-)
G155058 NA non-coding downstream 301428 12003140 ~ 12023672 (-)
G155059 NA non-coding downstream 307734 12007468 ~ 12017366 (-)
G155003 NA non-coding downstream 392153 11932112 ~ 11932947 (-)
G154954 NA non-coding downstream 635052 11689740 ~ 11690048 (-)
G155183 NA non-coding upstream 121257 12447520 ~ 12447719 (-)
G155235 NA non-coding upstream 279460 12605723 ~ 12611445 (-)
G155284 NA non-coding upstream 420160 12746423 ~ 12746716 (-)
G155326 NA non-coding upstream 564844 12891107 ~ 12891358 (-)
G155331 NA non-coding upstream 582431 12908694 ~ 12910923 (-)
AMCG00005875 NA other downstream 948562 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 964226 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 985965 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 1000032 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 1459304 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 342993 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 352142 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 517502 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 570291 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 593860 12920123 ~ 12949967 (-)

Expression


Co-expression Network