AMCG00005928


Basic Information

Item Value
gene id AMCG00005928
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10207320 ~ 10218325 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005928
ATGGGCTCAAGAAGAGACTCAGGATCTAAAAATGAAGGGTACACAGGGTTCAGGCTGGTGAATGGCACTGACTCCTGCTCTGGCCGAGTGGAGCTGCGGTACTACAGTGAATGGGGGACAGTCTGTGGTCACTATTGGGATCTGAGAGACGCCAGCGCTCTCTGCCGGCAGCTGAACTGTGGGTTTGCTGTAGCGGCTCCAGGACAGGCCAGGTTTGGAGAAGGCAGTGGCTCAATTTGGGCTGATGTGTTTGAGTGCCAGGGTAATGAGACACAGTTGTCTAAGTGTCCAGTGTCTACATGGGAACGTGGTCCATGTAGTCATGGTGACGATGCAGGAGTCGTTTGCTCTGagtcATCCTTCTCCCTCTCAAGTGGAGTCAGGCTGTCGGGTGGAGAGAGTCGCTGCGCAGGCCGGGTGGAGGTGTACTACAGCAGGACCTGGGGCAGAGTTCTCCAGGACTCCTGGGGCTCCAGAGAGGCCTCTGTGCTGTGCAGACAGCTGGGCTGTGGCTCCGCAGTGGAAGTCTATAACTCCTCTCTGTATGGGACAGGTGACAGTGACGTGTGTCTGACAGGTATTCAGTGCTCTGGGAACGAGTCTCACCTGGGCAACTGCAGCTCTCCACAGACACTCAACTGCAGCTCCAGACATGGTGTGGCCGTGCTCTGCTCAGACCACAGGTCCCTCAGGCTGGTCGGAGGAGATGATCCCTGTGCTGGGAGGCTGGAGGTGTATCACAGTGGCTCCTGGGGGATGGTCTGTGATGACTCTTGGGACCTGGCAGACTCTCAGGTGGTGTGCAGGCAGCTCCAGTGTGGGACGGCCCTCAGGGCCCCAGTGCCAGCCTCCCTCAGCCAGGGAACTGGACCCATCTGGCTGGACGAGGTGGGCTGTCTGGGGAATGAGTCGTCTCTGTGGGAGTGTCCCTCAGCAGGGTGGGGACAACATGACTGTGGATACAAGGAGTACATAGCAGTGATGTGTTCAGAGTTCAAACAGCTGAGACTGGCTGATCAGTGTTCTGGACCTCTGGAAGTGTTCTACAATGGCGTCTGGGGCAGCGTCTGTACCAACAACATGGATTCATCAATAGCTACAGTGGTCTGTCGTGAGCTAGGCTGTGGAGACCAGGGTTCATTTTCAGAAACGCGCTCACGCCTGGGGAGTGGTGCTCCCAAATGGCTTGATAATGTTCACTGTCAAAGGTGGTACTCTACATTGTGGCAGTGCCCATCATCTCTCTGGAATCAGACCAACTGTGAAGACTATGAGGTGGCAGAGATCACATGCTCAGAGCCCTTGGACCTGCGGCTGACTGGCCCCGATAACTGCTCTGGCCGGGTGGAGGTGCGCTATGAGGGCTCCTGGGGGACAGTCTGTGATGACTCCTGGGACCTGCAGGATGCCCAAGTGGTCTGCAGGCAGCTAGGCTGTGGGGATCCGGTGAGCATTGTGGGAGAGCGAAACTCTTCATTCGGGAGAGGAAATGGTACCATCTGGCTGGACGAGGTGACCTGTAGAGGCAGTGAGCTGCACCTCTGGGACTGCTGGCACACCCCAATGGGACAGAGCGACTGCAGACACAAGGAGGACGCAGGGGTGATCTGTGCAGCTGATAACGGGCCGCTGGTACAGAATCAGCTGCTGCAGGGTGTCAACATCCCAGCGCTGGTCTTCCTGGTGCTGTGCGCTGTGCTGTTCGTGGTGCTGGCTCTGCTGGTTGGGCAGCTGCTGCAGAACAGGAAGCTGAAGAAAGCCTTATCTGAGGTGGAGGTCGGCCCCTTGCATGAAGCCGTCTACGAGGAGATTGAGTACAAATTGGCCAGAGAGGGAACCTACAGCGCCCCCAGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005928 True 1857 mRNA 0.57 8 10207320 10218325

Neighbor

gene id symbol gene type direction distance location
AMCG00005934 NA coding upstream 70604 10132128 ~ 10136716 (+)
AMCG00005798 pitpnm3,LOC102785427 coding upstream 154511 10043818 ~ 10052809 (+)
AMCG00005799 NA coding upstream 174498 10020967 ~ 10032822 (+)
AMCG00005806 NA coding upstream 239173 9946752 ~ 9968147 (+)
AMCG00005807 med31,LOC107699947,LOC107599285,LOC107684212 coding upstream 263996 9941462 ~ 9943324 (+)
AMCG00005927 NA coding downstream 42324 10260649 ~ 10261465 (+)
AMCG00005820 NA coding downstream 194200 10412525 ~ 10416137 (+)
AMCG00005819 NA coding downstream 204784 10423109 ~ 10428966 (+)
AMCG00005817 cactin,LOC106600017 coding downstream 213238 10431563 ~ 10436502 (+)
AMCG00005818 mpnd,LOC106591182,LOC107717566 coding downstream 261885 10480210 ~ 10486749 (+)
G154388 NA non-coding upstream 127884 10078307 ~ 10079436 (+)
G154343 NA non-coding upstream 263177 9905772 ~ 9944143 (+)
G154252 NA non-coding upstream 765939 9440493 ~ 9441381 (+)
G154175 NA non-coding upstream 1013133 9192296 ~ 9194187 (+)
G154147 NA non-coding upstream 1098950 9100429 ~ 9108370 (+)
G154447 NA non-coding downstream 67189 10285514 ~ 10332094 (+)
G154451 NA non-coding downstream 84632 10302957 ~ 10303497 (+)
G154473 NA non-coding downstream 201581 10419906 ~ 10489854 (+)
G154505 NA non-coding downstream 305642 10523967 ~ 10526052 (+)
G154574 NA non-coding downstream 357654 10575979 ~ 10576437 (+)
AMCG00005802 NA other upstream 117551 10065160 ~ 10089769 (+)
G154330 NA other upstream 323365 9881382 ~ 9883955 (+)
G154283 NA other upstream 617522 9587802 ~ 9589798 (+)
G154251 NA other upstream 769051 9435900 ~ 9438269 (+)
AMCG00005787 NA other upstream 1353220 8828578 ~ 8854100 (+)
AMCG00005929 NA other downstream 48948 10267273 ~ 10356244 (+)
AMCG00005851 NA other downstream 79564 10297889 ~ 10304909 (+)
AMCG00005821 NA other downstream 244212 10462537 ~ 10469406 (+)
G154486 NA other downstream 252218 10470543 ~ 10471631 (+)
G154499 NA other downstream 294179 10512504 ~ 10516390 (+)

Expression


Co-expression Network