AMCG00005935 (LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619)


Basic Information

Item Value
gene id AMCG00005935
gene name LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12894120 ~ 12895452 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005935
CAGTGGCTGAGCAGTTCCTTTCCTTCTTTGTTCTCTGCAGAGAAGAATAACTTGTCGTTCATCGAGACCTCAGCGCTGGACTCCACCAACGTAGAAGAGGCTTTCAAGAACATCCTCACAGAGATCTACCGGATCGTCTCACAGAAGCAGATCGCCGACCGGTCAGCGCACGACGAGTCTCCAGGCAACAACGTGGTGGACATCAGCGTGCCGCCCACCACCGACGGGCAGAGAGCCAACAAACTGCAGTGCTGCCAGAACCTGTGA
>TU195625
GGGCAACAAGAGCGACCTGCGCCACCTGAGGGCCGTGCCCACCGACGAGGCGCGCGCGTTCGCAGAGAAGAATAACTTGTCGTTCATCGAGACCTCAGCGCTGGACTCCACCAACGTAGAAGAGGCTTTCAAGAACATCCTCACAGAGATCTACCGGATCGTCTCACAGAAGCAGATCGCCGACCGGTCAGCGCACGACGAGTCTCCAGGCAACAACGTGGTGGACATCAGCGTGCCGCCCACCACCGACGGGCAGAGAGCCAACAAACTGCAGTGCTGCCAGAACCTGTGACCTCCGACCTCTGCGgcaccccctccaccccaccccctcatcTCTGCTTTGTTCCCGAGTGTTGCACAGCTGCTGTCCCGTGTTCCCTGTGATTTCTgtgggattgtttttttaaaatagattttctttctCGTACTCACTGTTGTACTTCGGTCCCGTGATTCAGTCTTTTCAAGTCGACGATCTCTCTCGTTACGCCATGAACTGAACCCCTGTCCCCTGCAGTGCAGGACCTGGGGGGGTAGCTGTGAGATCCATCAATGCTACTATAGTACAGTAGTGGGTGTGTAGTTTAACACAATGTCCACTTGATGGTGCTCTGTATATAACCACCTACAGTAGCTCTACAAAGAACCTTCCAGAATAATAACAGTACAGtattagtctctgtttttcatttgtatcgATTTTTACAGTTTGTCACCAGACCAAAAAAAGTGTAACTGTTCTTATTTGAAttgtaattactttttatatattttttgtttgtttgtttgcttaattaaattaaatcccacccaaaaatattctgaaacaaaaaatgAGATAAAGGAATATTAAACTAGTGCTGTTTCAAAGAACAACCATTAGAGTACCCGTCTGAGTTTTTCTCTCAATAACGAAGCTTGAAAAAAGGTCCAGACTGACCCGCAACAAGCGAACATGTTAGTTCTGTTCAGCGCCAATGTTTTACTCCGCTTACTATAACAATGCgaactgtactttttaaaatgactgtttATTGCTTcctgtttaaagtttaaagagtTTTTGTGAACTTTTAATTTGATAGGATGTGCTAATACAAGCCAATAGAGA

Function

NR:

description
PREDICTED: ras-related protein Rab-11B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005935 False 267 mRNA 0.55 2 12894267 12894633
TU195625 True 1111 lncRNA 0.45 3 12894120 12895452

Neighbor

gene id symbol gene type direction distance location
AMCG00006062 fbn3,fbn2b,LOC106613712,LOC106573567,LOC108441289 coding upstream 54456 12785301 ~ 12839664 (+)
AMCG00005986 NA coding upstream 152229 12739471 ~ 12741891 (+)
AMCG00005985 lsm7,LOC107593053 coding upstream 155596 12736127 ~ 12738524 (+)
AMCG00005922 NA coding upstream 288272 12561697 ~ 12605848 (+)
AMCG00005920 NA coding upstream 349263 12521871 ~ 12544857 (+)
AMCG00005965 NA coding downstream 74422 12969874 ~ 12995480 (+)
AMCG00005963 NA coding downstream 100132 12995584 ~ 13020294 (+)
AMCG00005925 NA coding downstream 201617 13097069 ~ 13107823 (+)
AMCG00005926 hapln4 coding downstream 215392 13110844 ~ 13117181 (+)
AMCG00005942 NA coding downstream 342870 13238322 ~ 13240049 (+)
G155304 NA non-coding upstream 2724 12891086 ~ 12891396 (+)
G155206 NA non-coding upstream 262749 12553425 ~ 12631371 (+)
G155207 NA non-coding upstream 308712 12545222 ~ 12585408 (+)
G155182 NA non-coding upstream 446436 12447480 ~ 12447684 (+)
G155053 NA non-coding upstream 690648 12201736 ~ 12203472 (+)
G155310 NA non-coding downstream 13242 12908694 ~ 12910931 (+)
G155297 NA non-coding downstream 24648 12920100 ~ 12937119 (+)
G155313 NA non-coding downstream 35864 12931316 ~ 12931875 (+)
G155350 NA non-coding downstream 126882 13022334 ~ 13023036 (+)
G155351 NA non-coding downstream 129168 13024620 ~ 13025468 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other upstream 179549 12711778 ~ 12714571 (+)
AMCG00005987 NA other upstream 184577 12691816 ~ 12709543 (+)
AMCG00005895 NA other upstream 988033 11903352 ~ 11906087 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 1283969 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 1484448 11406306 ~ 11409672 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 130312 13025764 ~ 13033408 (+)
G155637 eps15l1,LOC107592720 other downstream 1202352 14097804 ~ 14098696 (+)
G155638 NA other downstream 1212721 14108173 ~ 14109870 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other downstream 1480543 14375995 ~ 14383580 (+)
AMCG00006022 NA other downstream 1524930 14420382 ~ 14424746 (+)

Expression


Co-expression Network