AMCG00005946 (ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725)


Basic Information

Item Value
gene id AMCG00005946
gene name ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13123557 ~ 13156318 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005946
GAGGACGTCCCCTGCCAGACCAATCCCTGTCTGCACGGAGGGAGCTGCCTGTCACAGGCAACGCTGTACAGCTGCCACTGTCCGCCTGGCTACTCCGGGGAGAACTGCGAGATCGATATTGACGACTGTCAGTCCAACCCCTGTGAAAACGGAGGCACCTGCATTGATGAAATCAACTCCTTTGTCTGCCTGTGTCTGCCCAGCTACGGGGGAGCCACCTGTGAAAAAGacacagagggcTGCGAACACAACTGGAGAAAGTTCCACGGCCACTGCTACCGCTACTTCACCCACCGGCACACCTGGGAGGATGCGGAGAAGGACTGCCGGGAGCACAGTGGACACCTGGCCAGCATCCACTCCCCCGAGGAGCAAGACTTTGTCAATGGCCTGGGTCACGAGAACACCTGGATCGGACTCAATGACCGCACGGTGGAGGAGGATTTCCAGTGGACGGACACCATGGCACTGCAATACGAGAACTGGCGGGAGAACCAGCCGGACAATTTCTTCGCGGGCGGCGAGGACTGCGTGGTGATGATCGCGCATGAGAACGGCAAGTGGAACGATGTGCCCTGCAACTACAACCTGCCCTACATCTGCAAGAAAGGCACAGTGCTGTGCGGGTCCCCCCCCTCGGTGGAGAACGCCTTCCTGATTGGTCGGAAGCGAGCGCACTATGACATCCACTCGGTGGTGCGGTACCAGTGCGCCGACGGCTTCCTGCAGCGCCACGTGCCCACCGCCAAGTGCCGCGGCAACGGGAAGTGGGATCGGCCCAAGATCATCTGCACAAAGGCCATTGTCCTTAGCTCAAGCAGTCATGCCATTTCAGTGCTGTGTCCTTCAGTGTCTGAATACGCCGTGCCGAGGAACGCTGATTATTCCCATTGTGAGCAGAGGCCAACAGTAGCATTACACTCATCCTCCTCCTGGAAAAATGCCCGTGGACCGCACATACAGGAGCGGTTC
>TU195763
TGGTCTTGATTAATCCCAGGTCCTGTGTTTACCTGTGTGTCCctcgtctgtgtgtgtctgtgcgtcttCTGTGCGTCCATGTATCcctcttgtgtgtctgtttcctgGCAGTGCTGTGCGGGTCCCCCCCCTCGGTGGAGAACGCCTTCCTGATTGGTCGGAAGCGAGCGCACTATGACATCCACTCGGTGGTGCGGTACCAGTGCGCCGACGGCTTCCTGCAGCGCCACGTGCCCACCGCCAAGTGCCGCGGCAACGGGAAGTGGGATCGGCCCAAGATCATCTGCACAAAGTCGCGGAGAGCCCACCGCTCCCGACGCCACCACCACAAATCCCGACAGGAGCGGAGAAAGCACAAGGCACACAGGAACCGAGGGCACCGGGCTGGCAATAAGGTCCACTGGCAGGAAGACCCGTACCTCTGAACCACAACGCCGCAGCACCACCCCGGAGTCAACCGCCCCCCAACCCCAGCCACGGCCTCTCACCCTCCCCCCCAGGAAGAGGCTCCTTGGAGTGGGGACATCTCACACTCAACACTGAGGCTTTCGGAGTCTCCTGCTAGGCCTCAGAGAGACAATAACGGAACCCCCTGTTCTCTTCCTAccgctccccctctctctgtctcttcctccttctcttaTCTATTCTCCCATCGCCTGTATTTAAACCCCAGTTTTGGGTTGTCTCTGTTTTATCTTGTGTGTTTACCCTCAATTCCCTCCCCACTCCCCAGTCCACATTAATCCCCATGTATGTGACTCTGACTAACTATGTTTTTCTGATATTTGTTTCcttgtcagtttttattttattatgattaattttttatttgaatttgggGGAGATTTGGTAAAAGATTCATTGTAAATACCAACCGCACTGTCGTAAACAGAGTGTGAAAATCATCGTACTTGAGGAATACGCAAAATATTGGTAAATCTCTCCTtttaaaacaacttattttcaattgttttcaatgttacACCAAAACAATTGATTTTGTCCTTCACACAAAATCTTGTGTATTCCTTGGACTGCATATTCTTACATCcttttttctgatttgttttctgtcgTCCGTGCAGTTGTTCTGACCCGTTACTTCAGAACGGTGGCAGAGTCCCCGCCctgttgtgtttattgtgtgtggaAGAGTGCTTGTGTTGAGTTTTAATTTCTGGGGAATGGTAGAACTCTGGAACTGTTTTTCTGAGCCAGACAGTTCCACGTGAGGACTGGAGAGAAGGGTTTTACGgtgcaaaattaaatatgacagCTAACTATCATCCATGGCAACTTATTTAGGCCACTCATGTTGAGTCAGTTACAGGGAGAAGAGTGAACTAGCGGCAGACTATGTCAAAGGAAATCCTTTACCCCCATTGTCCTATGAATGCAtgtccaaaaaaacaaacctccTGAATGAAGTGTCTTTGGAATATTGTCCAAAGTTATGTACATACAGCCTCCAAACTTTTCTCCTACACTAATGCAGACAATGTTTTCCCTCCCATCTTTCTGCGTGACGACTCTGCTCAAATCCGACTGATTAGTGCCCCTTGTTTCCCAGTCCTTAACACGATGCCCCCCCTATGCGttgttattttcacagtttgttcACAAATCGCTCTCGCCGAGATTAATAAACCAGTCGCGCTTCCTCAGTGCTGCTGATCTTATTAGGCGGAGAAGAcgatatttttccatttcacaaACGAGAGGAATAATTTAATGCTCGGCTTCTAAAACACTTTTGCACGGCTTTAGCTGAACATTCCTACTTGGGAGAGCCGTCTCGGGCCGTGGTAGATTGCGTCGTGTCTCACTCCTTCCCCATAACCCGTTGTCACCCCTCTAACCCTGTCTCCCTGTGCTAATGGTCTTTTTCCATCACCAGCCAGGGGCTACTAATTATCATGGCCACCCAGGAGCAGTGGTGTTGTCAGTTCTTGCCAGTGAGAAGGAAGTGCTTGGATTCTTGGCTTGTGTTGTGCACACCCTGCATCACACTGCATCAAAACCACGATGACAGGCAATTTGCAGCAGCCTGTGGGTGCGACGCTTGTGTTCTTGCTGTCGTAGGCGGCCGAGCTCTGAGTTTTCATACAAAGGAGTCCCGAAAATAGAAACGGAGCGCCGGGCAGGGAAATGATTTGCAGTTCCTGAGTTCCACACTCATCTGGTCCACAGTGGAGACTTCATAGGGTCCAGACCAACAAAAGTGAAATGATCTGAGCGAAATTAATTTCCGAAGCAAACGTTGAGGGGAGCAGTGATGGCAACGGCCTACTTTTGCAGAAgtgggaaataataaaaggagACGGGATGTTTAAAGATGATACACATTAGATGGCCAGTGTGAAACTGTACCTACTACTGCAAGATGCATATGGTGCTTTAAAGGGCATTAGAAATTGTCAAGAAAGATCTCTGAGTGCCGTCTGGTCTGCCACGGCCTGGGTTTCCTCCGCAGCAATGTCAGTCTTTTTTCAACTGCTCAACGCCACAATCAGCAGCTCTCATCACCTTGATACGGGTGTAATCTCCTGCAGATTACAACCCCCCCCTCCACTATCACTTTTAACTCTGGCTCTATCCACCTTGTGAATGACAAggacatgtaaaaaaaatagaataaagaaGACAAAAGAATGATATCAGTACAAGCCATCTTTTCCCAGCTTGGTTAATTAATGAATGGAGGTTATCGCAGGAGAATTTGTCATTCATCAGATGTGGTCAGGTTTACCGTTACATGGGGTGATCTGAAGTCTGGGACACGATGCAGGGAGTCCTTTGCACATCAATGCAATATTGGActtaaaaaagggaaatcaaatATGTTAATTAGTGTATTGACTCCTGGTGCTACCAGTCTCTGACAGCACATCAAGCACACGCTGGGACAGACTCCTGCAGTTCAACCTTGTGCatcatacatacaaatataaataaataaataagagccTTATGCACACACTTTGTACACTCCCTGACCACAGAGATGCACGTATTATGTCTGTGCATGGtgtgtaattttgaattttttaaaacacttagcTGTAAAGCTGtaggttttaaataatatatattattattataatatttcgaaaaaaaagtttgaaaagcCTCAGGTTAGGGCCTTGCTCAGTGTTCATCGCTAAAATACGACCTGTCATTTTCCTAACCAAGATGGAAGCGTATTTACTCAAAATGTTCAGACCATGCCTGACAAGAGAACAAACACCATTATTCAGGCTGGGAGTGCAGCCACGGTACAGTAGTCCTGCCAGAACACATTGCCGATGGCAGATTGCGAATTTCAGATTGGAATTTGGATCAGGATATAAAAATGATCACCTAGGCCTTCTGAACTGAGACGTGATGGGCCCTGACTTTTTGCAGGTGGAGAAAAAACTATCCAGCTGATGGTTAGGAACGTATTTTTGATGCTGATATAAAAGCGATGCCAAGCCTTTGCATTGGAAGTGCGCCAAGATACAGTATCTTGGCTATCTATGATCACGACTGGCCTAGATGTTCACCAAGCAGCACTATACTGAGGGCCATGTAGTCTGTCCAGCATAGTGGATATGGGTCTGGCAGGAAAGGGTGAGAAAGCAGTGTTTCTACAGCCTGCAAAGCATGCTTCCTTTTGTCCCTTTCACCtgaacacaattattttacGTGCTTCCCGTTCAATATATAGGCACagtttaattgttattgttagtaGTCTAAATATtgctctgtctttgtttttgtgtggctTACAACAGCGTAATAACAGGGCTACAGCCATTTGATTTTCCTCCTTTGTTGGCGAAGGAGCTGCCCACTCCTGTGTCATTCGGTTTCATTCAATTCCTGCCAGCACTTGGGGCTGCAGTTTGGCGAGGTCACAGTCACTCTTCATACCTTCTGAAGCCAGTCTGTTTAAAACAGGCAGAaactgaaggagaaaaaaggTATTCCTCGTCAGCCACTGCTCTTCTAGATATCACACTGTTTGTTACCTGCTTCCCCTGAGCTCTTCATTGAATCTGGGCAGGGAAGATGGGCACAAGCAGCCTGattttaatttctcctcatGTCCTATAATAAGGACACCATCCATAAAAGTAATAGATCTACTTCGCTTCATTATTtgttctttcattcattcaattattcGCACTTTGGTCATCTTTCTCGACCTTGAAACGCAAAAGCTTTACCGCCCTCGGACAATCACTCTTGTGCCGTTTGGCTGAAGTCCCGATTGGTGACCATCGGGCTTTCGCCACCTATCACTCTCAGTCTTGTAAAACAAGCAGGCACGTCGCCCAGCGATCTTGTCCAAGGCGGCTGTAATTTACAGACTTCTCAAGAAATGTACCGACTCCCGGCTCCTTTGTGGAGCCTGATGGTCTTGAGAATGACAGCCGAGCGCCTAATGAAGCGATTGCTAATTACAGGCCGTAATTAAGCTGATAAAGTGCTAAACGCACCAGGCACGCTGCCTGTCAGGGTCAGACACGACTGATATCTGGCCTTGTCTGCAGGGAAGGCACTCAGAACCGGCGGATTCCTGCTAGATGATTATTCAACAGCAATAATGCTTCCTGCTTGAGATCAAGGGGTTCCATTTTCTTAACAGAGTGTGTTTTCTGAAGTTATCGGAGAAACATAGATGCACATCATTATTGTTAGTGCATGCTCTCATTACAGCTCCTCAGGGTCACACACAAAGCAAATACTACAGTTCCCAAGGTTGGTGGAGAGGGCTTAAGTAATTTTAAACAGGGGCAAGAGGAGCTGGCTGTGCTGTGCCATTTGTGTGACACAGATAGGCATTTATAAATCTGGATTAAAAAACCAACACATATCCTGCCATGAGAGAATCTAATTAAGCACAAGTGATCTAAGGTCTTAAACACTGTGTTGCGTGTGCACAGTATGAAGGGAGTGTGGGAAAGCAGTGGTGGCTGGGGATGGTGACAGCCCCTCTCCAATATCAGCATTACACTGGATACCACCCTAACTGAAGGACTGCTTTTTGTATCAGGTTGTTCCCCATTGCCATTGTGAATATTTAAGCAGGAGATAACACTTTCTGAATTGAACAAGACAAAGGCtgataaataaactaataaactaataagagagagagcagaaggGCAGACTTCAGGAGATTAACATAACAGCCAACTCAGTCCCTAAATCCCTCAGACGGCAGATTGGAACAAGCGTGGCTTTTGAATATTTAGCCTCTGTCACACCACCCCTGTTCTCAAACCCTCCCTTCAGAGCCTTCCCTGGTTCTGATAAGTTCCCTCGTCAGAGATTAGCCTGACGCTAAGACTGCGCCGCTCTCCTTTCTCACGACAAGCAGCTCTTGTCCCAACGGCGGCTTGGATCGGGGGTGTCGACTGGGCATCAAAGGTGTGCTGTGCGCTGCCAGGGCTGTCTGAGATAGAGGGATGCGACACGGCACCCCCACCTCTCAGATAAGACGCCATACTAAGGAGCGCAAGGCTTCTGCTGCCTGTCAGACGACGACAATCCCTCACGGTTAATCTTGTTCGTGTAGCTCAGGCTGCTCCACCACACGGTGGATTAGCATCTGGGGTCTCTGTTTGGGAAAGAGAGAAGCACCCTTTGCCAATTAGGGGCTTGTGAATGGATCGCCTTGAACTCGACCAAGCGCGCCCCACCGAGGAGGCCCCTTCGGATGGTAATCATCGTTCTTGCTTTTATTGCCATGACGGCTTATCCGATGGGGCGCCTTTGTTTGTTAATGGATAGCAATGATATATGATCCTGTACAAAGGGTTCTTTTTTTGAGCTGCACGATGTGTGCCAACCCTTGGGTAGCAAAATTGGCAAATGGAATTGATACTATCCACTTGGCACTGTGGGTAATTGTAACCGCACCTGAGCACAAGCCTTGTGTGTTTGGTCATTTATTCCGTGGCTATTATAAGCCCGCTTTTGAACTGATCTCTTTTGTCATCTGTTTGTTGCTATTGAGTTACCAGATGCTCATGCTTTGTACCTTGTACTTTTAACCTGCTGCAGAAGTGTGGATttcattatgtgtgtgtgtgtgtgtgtgtgtgtgactctcaGCAAGCATAAACCCTGCGTTTCCTATTGTAACAGCAGTCTAAAGCTCAGCAATTCCTTCCACCAATCAGGAAGCTCTGTCAGTTGGAATGTTGGCGTAGCCTCGTTGATCTCTGGAACGTTCTGTCGGAATCTGAACACACTCATTGTTATTCTCATTGTCGTTCCTTTGTTCCCAGTAGCTCGGAGCAGCGAGTCTCATTCCCAAACGTCTCCTGAGATTTCACGTgttctgttttggtttggtttggtcaGTCGATTTCACTTTGCTTTGCGGACATTTCTgaagacaacaacaataaaaacattctcaCAAGATCCTTTCGCAAAGGGGGCAAACCAGCATTtgcttatttaaacaaacaaaaaaagaaagaaaaaaaaaagaaaaagaaaacgtgtGACTTGTAATGGACTCTTCGAAGCATTTCTACTCTATGtgatgtaaatattttgtgtgacTTTTTGAAATACCTTGAAATCTTGATGTGTTTGTTATTTAGTCTCCCAGGGCCATGTGCATAAAGCATGCGAGATCACCACACATtctttgggggggaggggggtgggggaaaatgtaaaatctaaatttagaggataaaaagaaacacacaaaaaaacacataaagcGCCTATTGAGACTGTGCAAATGTTAGCCTCGTGACAGATTTGCAGAGGCGCTTGACGACTTCATTGCCTGGCTTGCGtatttgggggaaaaataaaaagaacagccAATGAACGGCGGTGTGCTCTGTGTGGTGGCCggtgttttatgaatatggctCTCTTAAGTATTAACCAATATTTTGTGCTGTTCTTATGAATCCCATTACTCTTACTGTATTATATTctttacaaaaaacaagaaaaaagaaaaaacaatcattaaaaattCTGACTCCACCGGTGGTGACAGTGCGTTGTCATGGAGGAGGTTGTGTGTTGTTTCCAGCTGGAGGAGAGACCGCggggaaggtgtgtgtgtgtgtgtgtgtgtgtttttagcaCGGCACTGCAGTGTAGTAGTCCTGCTGTCTGTCCTGTCTCCCACCAAAACTGTCTCAACCTGCCCTCTACTCTTCCACACAGTTCTGTCCATCTTCGTTGAGGAATGTCGCTGTTTTTAAATCGCAACACAAAGGGCTTTTCTAAAACCCTGTATAAACCCTCTGATGTCCCCTATCTCGAAGGGTACAACTACTTGACCTTTAACAGCCCGGCACACAAGTCATTACTACGGACGATGGATGTAATTGAACAGTGTCCCAATGGTAAGGGTATGGCTGCCAGGGTTGGATGGGACTAGAGAAGGTAGGACTCTATCTGAGTGTCATCCCAGGAGGTTACAACGAACAGtgggaaaacaataatacaaaataaaaaaaagaatagtatGAGTTTAATTGCTGCAAAATGTTTCCGCTTTAACACTATAATAACAAGACCCAGTGTGAACATAATCAAAtcagagcaaaaacaaacatatattgcACTGTGTTGCATTATTCTGCTCATCCAGAGTAGAGCACGGGAAAATCTTCCTCGGTGGGCGGACGACTCTCGCAGGCATCCCAGTCGCACTGCAGAGCGCTTTCAGACAAGACTGATGCTGGTggagatgaaggggaggggGACTTCTGATCGTCTCCATCGGTGCGCTGGGGAGGCAAAAACCAGAACCAGCCAGCTAGCTGCTCTCCACTGCCTCTTCTTCAAACTGTCAGATACAGACGGGGGGCGCTCAGATGTCTCCGGAGGGATCAATCTCTCTGTTCCTCTATGCTCGCCTTCGATTAAAACTAATCATTCCCGAATACCCGTGTCGCCCGCACGGGAAGACATGGCAGCACTGTGCAGAGGAGG

Function

symbol description
ncanb Predicted to enable calcium ion binding activity; carbohydrate binding activity; and hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human NCAN (neurocan).
ncan Predicted to enable calcium ion binding activity; carbohydrate binding activity; and hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within regulation of synapse structural plasticity. Predicted to be located in Golgi lumen; extracellular region; and lysosomal lumen. Predicted to be active in extracellular matrix and synapse.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005946 False 972 mRNA 0.59 7 13131727 13156318
TU195763 True 7977 lncRNA 0.46 2 13123557 13132539

Neighbor

gene id symbol gene type direction distance location
AMCG00005967 polr2e,LOC107599482,LOC107669821 coding downstream 97940 13022361 ~ 13025617 (-)
AMCG00005938 hnrnpm,LOC105900966 coding downstream 233082 12881785 ~ 12890475 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding downstream 242960 12872911 ~ 12880597 (-)
AMCG00006064 NA coding downstream 364114 12746929 ~ 12759443 (-)
AMCG00005990 sppl2b,sppl2 coding downstream 387650 12726847 ~ 12735907 (-)
AMCG00005948 NA coding upstream 12759 13169077 ~ 13171020 (-)
AMCG00005947 NA coding upstream 16568 13172886 ~ 13181536 (-)
AMCG00005943 NA coding upstream 84164 13240482 ~ 13244787 (-)
AMCG00005944 NA coding upstream 91436 13247754 ~ 13250688 (-)
AMCG00005945 tmem161a coding upstream 122985 13279303 ~ 13284728 (-)
G155400 NA non-coding downstream 15490 13107812 ~ 13108067 (-)
G155391 NA non-coding downstream 16064 13079485 ~ 13107493 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding downstream 90149 13028204 ~ 13033408 (-)
G155331 NA non-coding downstream 212634 12908694 ~ 12910923 (-)
G155326 NA non-coding downstream 232199 12891107 ~ 12891358 (-)
G155426 NA non-coding upstream 95804 13252122 ~ 13252489 (-)
G155429 NA non-coding upstream 110645 13266963 ~ 13267162 (-)
G155431 NA non-coding upstream 117322 13273640 ~ 13274693 (-)
G155502 NA non-coding upstream 308137 13464455 ~ 13465588 (-)
G155503 NA non-coding upstream 310652 13466970 ~ 13484019 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 71838 13036424 ~ 13051719 (-)
AMCG00005936 march2 other downstream 152151 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other downstream 173590 12920123 ~ 12949967 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other downstream 268754 12843765 ~ 12854803 (-)
AMCG00005992 NA other downstream 412421 12678405 ~ 12711136 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other upstream 412149 13568467 ~ 13583351 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other upstream 507746 13664064 ~ 13698534 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 1002813 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 1180573 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 1352915 14509233 ~ 14509614 (-)

Expression


Co-expression Network