AMCG00005960


Basic Information

Item Value
gene id AMCG00005960
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12194580 ~ 12212371 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005960
atggacCAGAGCTTCGAACATGATCGGCAAATACCTGGGAGGAAAACAAGACAGGGCACTGTGTGTCAGCGCTGCCCTAGTGGAGAGGTGGTGTCACAAGTTTTAGGAAGGACAAACGGCGCCCTGATCATCGGTGGGAGAGCTGTGCTCCCACATTCCCGGCCCTACATGGCATCCATCCAGAAGAACGGCACTCACTTCTGCGGGGGCTTCCTGGTGGCCATGCAGTGGGTGATGACGCCGTGCACTGCTTCACCCCTGATGGGAGACCCCTCTGCGTTCCTCACAAAACTGCTCGGCACTGAGACCAAGCGGCAGCATGGAGGGGTGCAAGAACGCACTGGGTGGTGCATCATGGGAGGCTGGGAAGCGACACCGCACTCTCGGCCCTTCATGGTGTCGATTCAGCAGAATGGCAAGCATGAGTGCGGGGGCTTCCTCATCGCCGAGAAGTGGGTCATGAGTGCCGCGCACTGCTTCACCGACCCGTCAGAGAAGACTGGCAAGGTTGTGCTTGGGGCTCACTCTCTATCCACGCCGGAGGACACCAAACAGGTTTTTGGCATCGCATCCCTCCACCCTCACCCTGATTTCTCCCTTGACAACTATGACAATGACATCATTCTGCTCAAGCTGGATGGTTCTGCCTCCCCGACGACGGCAGTGAAGCCGGTGGCGTACCAGCGTGGAGGCGGGTATGTGGCCGCCGGATCAGAGGTCACCGTGCTTGGCTGGGGCTCCACCAGCAACCTGGGCAACCGACCGGACGCCCTGCAGGAGCTCACCGTGAAGGTCATGAGAAGCCCCCTGTGCAAGCGCTACGATTACTATGGAGACAAGTTCACCGACAACATGATGTGTGCGGCCGGACACATCAGTGACACCTGCGATgGCGACTCCGGAGGTCCCCTCATTCACAGCGGGGTGGTGGTGGGCATCACCTCCAACGGCAGCAAGAAGTGTGGCAAGCCCAAGAAGCCGGGCATCTACACGGTGGTCTCCCGCTACACCCAGTGGATTGACAGCGATGTCACAGCAGAAGAAGAGTGtgaacacagcagcacagctctCTCTCCCAGCATGGCATCTCTCTACATTCTGGCGATTATTATCACCGTGACTTCAGCACTTGCAGGTGGCTCTGGTGTTGAGATCATCGGGGGCAAAGAAGTCCCGCCTCATAGCCGTCCTTACATGGCCTACATTTTACTTGGAAGAGGAAACTCATCTAGCTGTGGTGGTTTTCTGATCCGTGAGGACTTTGTCCTGACGGCAGCGCACTGCCAAGCACAGAGTTACACAGTTATCCTTGGAGCCCACAACATCATGGAAAATGAGAAAGCACAGATGATCACACAGGTGGAGAAGGCCATCCCTCACTGTGGTTATGAGGAATATCACAATGACATCATGCTGCTGAAGcttaaaaaaaaggttCCTCTGAATAAGAACGTGGCCGTGATTCCATTGCCATTGGAACAGAAGAGTGTGTCACCGAACACAGAGTGCTCTGTGGCTGGATGGGGGGCAACGGACCCCAGTGGGAAAGGCAGTTCTAATACTCTGGTGGAGGTGAACGTGACAGTGTGGGATTTCACCCACTGCAAACAGGAGTGGGGCAGAGAGTACACAAAGACGAATATCTGCGCCGGTGATCCTAAGCATGGAACTTGCTTTggggACTCCGGAGGACCTCTGGTCTGCAATGGGGTGGCACAGGGCATCGTCTCCAAGGGCAGCCTTCTGTGTAATGAGAAGCCTGGTGTCTTTACCAAGATAAGCAGATACATCCCTTGGATCAATGAAATTCTGAACAAGAAGGTTTCTCTGAATAAGAATGTTTCCTTGATTCCATTGCCGTGGGATCAAAACAGTGTGTCACCGAACACAGAGTGCTCTGTGGCTGGATGGGGGGCAACGGACACAGAAGGGAAACACAGTTCTAATACTCTGAGGGAGACAAATGTGACAGTATGGAATGACACCTACTGCACAGAGAAGTGGGGGGAAGAGTACAGGTGCACGAATATCTGTGCAGGCGAGCCTCAGAATGGGACCTGCAggggggACTCCGGGGGACCTCTGGTCTGTGATGGGGTAGCATATGGCATCGTCTCCAAAGGCAGCAGATTGTGTGAATTCAAGCCCTCTGTATACACAAAGACCGCCGAATTCATTCACTGGATAAATGAAACTCTGGCCAATTACTGAGCTTTACTGAGGCCCCTGTTTAGAAGTGCTGCTCTGCTGTGTATACAGTCCTACTGAAACAGGCAgcaaaaatattgtttctgCATTAATCTGAATTTAGCTTTGCAAAATGTCCTGCTTGTGGGGTCCACTTGGCTGATGTGTTTCCCA

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01334 CFD; complement factor D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005960 True 2361 mRNA 0.54 14 12194580 12212371

Neighbor

gene id symbol gene type direction distance location
AMCG00005893 polrmt,LOC102781777,LOC103149847,LOC101483880,LOC106937851 coding downstream 74627 12087043 ~ 12119953 (-)
AMCG00005905 NA coding downstream 200849 11984663 ~ 11993731 (-)
AMCG00005901 NA coding downstream 263730 11918788 ~ 11930850 (-)
AMCG00005899 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700,LOC104964522 coding downstream 276515 11906566 ~ 11918065 (-)
AMCG00005900 NA coding downstream 292190 11897018 ~ 11902390 (-)
AMCG00005959 tnfaip8l1,LOC107702643,LOC107727554,LOC107733325 coding upstream 26962 12239333 ~ 12246234 (-)
AMCG00005961 ncln,LOC106573831 coding upstream 54714 12267085 ~ 12280796 (-)
AMCG00005919 NA coding upstream 112729 12325100 ~ 12326263 (-)
AMCG00005918 NA coding upstream 122946 12335317 ~ 12340498 (-)
AMCG00005917 hiat1a,mfsd14a,LOC108413745,LOC107738165,LOC107659405,LOC102785602 coding upstream 136874 12349245 ~ 12362876 (-)
G155073 NA non-coding downstream 68452 12125161 ~ 12126128 (-)
G155058 NA non-coding downstream 170908 12003140 ~ 12023672 (-)
G155059 NA non-coding downstream 177214 12007468 ~ 12017366 (-)
G155003 NA non-coding downstream 261633 11932112 ~ 11932947 (-)
G154954 NA non-coding downstream 504532 11689740 ~ 11690048 (-)
G155183 NA non-coding upstream 235149 12447520 ~ 12447719 (-)
G155235 NA non-coding upstream 393352 12605723 ~ 12611445 (-)
G155284 NA non-coding upstream 534052 12746423 ~ 12746716 (-)
G155326 NA non-coding upstream 678736 12891107 ~ 12891358 (-)
G155331 NA non-coding upstream 696323 12908694 ~ 12910923 (-)
AMCG00005875 NA other downstream 818042 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 833706 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 855445 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 869512 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 1328784 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 456885 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 466034 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 631394 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 684183 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 707752 12920123 ~ 12949967 (-)

Expression


Co-expression Network