AMCG00005970 (atp5d,LOC107554819,LOC106613744,LOC107719603)


Basic Information

Item Value
gene id AMCG00005970
gene name atp5d,LOC107554819,LOC106613744,LOC107719603
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13714984 ~ 13718428 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005970
CTTCTGGGTAGCCGGCCGTGTCCTTGTCCTGCTATCAACCACACTGGCGCACTGACTTGACTGAAGAGTTTAGTCTCCTGTCAAAGCGgcttttctttagtttttgtatAAACTAGACCCCAGCATCATGTACGGTCTTCGGCTCTTCCTTCGTCGCTCCCTCCCGCTCCTGCGCCAGGCCCGGTGCTACGCTGACGCGCCTTCCTCTTCGCCCCAGATGTCCTTCACATTCGCCTCGCCGACGCAGGTTTTCTTCCGGGAGGCCAGTGTGAAGCAGGTCGACGTGCCCACGCTGACGGGCGCCTTCGGTATCCTGCCGGCTCACGTTCCCACCCTGCAGGTGCTCCGGCCAGGCGTTGTCACCGTCTTCAACGAGGATGGTGGGGCCACCAAGTTCTTCGtgagCAGCGGCTCGGTCACCGTCAATGCCGACTCGTCGGTCCAGCTGCTGGCAGAGGAAGCGGTGCCCCTCGATGGCCTGGACCTCTCTgctgctAAAGCTAACCTGGAGAAGGCCCAGTCTGAGCTGGTGGGAGTATCGGACGAGGCAGCCCGAGCTGAGATCCAGATCAGCATAGAGGCCAACGAGGCCATCGTGAAGGCATTGGAGTAGAGGCTCTTTGCAGGGTATGTATGCCAGCCTTCCCCCGGTGCTCTCGCCAGTGCAGGGTGTGGGCATAGCGGAGGAGTGGTGGACTGTTAAAGGTTTGCTTTATTGCCACCTGTTGTCGAATTGCTCTGGTGATGATTATTTCTGTTAAGGGACTTTGAAGCAGGCTTTTGCTACTTCTTGGTCAGGCCCAGATCTCTCTcgactgtattttcttttctttcagggACGTGTGTTGTATCGGTGTAAAAGTGGACATTACAATCGGACTCTGCCCGGTCAAGTCAGTAACTACGAGATGTCTTTGCTTTGTACAGTGGATGAAGTTAATGccaataaatgtatttggatAAACTTACCGGCCTG

Function

symbol description
atp5d Predicted to enable proton transmembrane transporter activity. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proton transmembrane transport. Located in mitochondrial inner membrane. Is expressed in several structures, including alimentary system; eye; genitourinary system; integumental system; and nervous system. Human ortholog(s) of this gene implicated in mitochondrial complex V (ATP synthase) deficiency. Orthologous to human ATP5F1D (ATP synthase F1 subunit delta).

NR:

description
PREDICTED: ATP synthase subunit delta, mitochondrial-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02134 ATPeF1D, ATP5D, ATP16; F-type H+-transporting ATPase subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005970 True 976 mRNA 0.55 4 13714984 13718428

Neighbor

gene id symbol gene type direction distance location
AMCG00005978 LOC106573600,LOC105011525,LOC106613740 coding downstream 147503 13561072 ~ 13567481 (-)
AMCG00005976 NA coding downstream 181100 13530876 ~ 13533884 (-)
AMCG00005953 NA coding downstream 252424 13462216 ~ 13462560 (-)
AMCG00005952 NA coding downstream 318300 13393658 ~ 13396684 (-)
AMCG00005924 slc25a42,LOC108239543 coding downstream 327590 13385183 ~ 13387394 (-)
AMCG00005969 NA coding upstream 33560 13751988 ~ 13761430 (-)
AMCG00005972 stk11 coding upstream 54054 13772482 ~ 13785885 (-)
AMCG00006003 sugp1,LOC107729615,LOC107563402 coding upstream 74934 13793362 ~ 13800830 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding upstream 95764 13814192 ~ 13827586 (-)
AMCG00006004 NA coding upstream 112489 13830917 ~ 13841962 (-)
G155521 NA non-coding downstream 37647 13675209 ~ 13677337 (-)
G155503 NA non-coding downstream 230965 13466970 ~ 13484019 (-)
G155502 NA non-coding downstream 249396 13464455 ~ 13465588 (-)
G155431 NA non-coding downstream 440291 13273640 ~ 13274693 (-)
G155429 NA non-coding downstream 447822 13266963 ~ 13267162 (-)
G155550 NA non-coding upstream 67578 13786006 ~ 13787634 (-)
G155591 NA non-coding upstream 158295 13876723 ~ 13881170 (-)
G155593 NA non-coding upstream 165163 13883591 ~ 13884628 (-)
G155652 NA non-coding upstream 370908 14089336 ~ 14092457 (-)
G155655 NA non-coding upstream 447751 14166179 ~ 14166404 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 16450 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 131633 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 558666 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 663265 13036424 ~ 13051719 (-)
AMCG00005936 march2 other downstream 743578 12896554 ~ 12971406 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 440703 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 618463 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 790805 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 961369 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 1064078 14782506 ~ 14784280 (-)

Expression


Co-expression Network