AMCG00005978 (LOC106573600,LOC105011525,LOC106613740)


Basic Information

Item Value
gene id AMCG00005978
gene name LOC106573600,LOC105011525,LOC106613740
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13561072 ~ 13567481 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005978
ACTTCTGCCGCCGGTCTTGCGTGTGCTGTTGCAGTCTCGTCCAAACTGAAAGTGATCCATCACGATGTCTGACGAAGGAAAGCTTTTCGTGGGAGGCCTGAGCTTCGACACCAACGAACAAGCCCTGGAAGATGTGTTCGCCAAGTATGGCCAGATCTCTGAAGTTGTCGTGATCAAGGACCGTGAGACCCAGAGATCTCGAGGCTTCGGATTCGTCACCTTCGAGAACCCTGACGATGCGAAAGACGCCATGATGGCCATGAATGGCAAGTCCGTCGATGGCAGACAGATCCGCGTTGACCAGGCTGGGAAGTCTTCTGGGAACAGGCCCGGGGGGGCCCATCAGGGGGCCGTGGAGGAGGATTCTACCGTGGGGGCAGAGGGGGTGGTGGAAGAGGAGGTGGAGAACGGGGATATGGCGGCGGCCGCTATGAGAACAGAAGTGGTGGCTATTCTTCTGACAGAGGATACTACAACAGAGACCGGCCACAGGGAGGCGGCTCGTACAGAGACAACTACGACAGCTATGGTGATGATGCCGGCTGGTAAAGCGAGCGGCAGCAACAGCACTCCTGCAAGTCTGGGCAGAGACCCCTTTCACCCCAGCCCACCCCTCCACGCCCCCGCAGCCAAGATCCCCGTCCCAAATCCACGGCTTGCGGACGCACaatacttaatatttttttctgttgaaaCCGACCATGTAGATATGAACAGTCCTGGAGAAGCACGGAGGGGTTGGGGAAGCGGGGTGCTGGCTTCTTTTCCACGTGGTGAAAGCCATCCGTTCCAGTCTGTCCTAGCCCCTCCatgagagggagaaaaaattGAATTTCCAAGTTCTCTAAGGTTCCATTGTAAGACATTGCCCCCCTGGTGCTGTGCAGACCGCTCAGAAGTGCATCCTGATGAGATTTTCGGCAGCTGTCTGCACAGAAACCCTTTTAAGATGCCCCTCTGAAGTGGGGTAAGGGAATTGGTAAGTTTTAGTGaaactccccccacccccaaaaagtCTGCCACCCCTGTTTCCATTTTCAAATTGGAGGTAAGCTACTGTCCTATACTCAACTCTTCTTGGAGGGAGAGTATTATCCCAACTGCCTGGAGTTTAAATCATTCTTGGGACCACATAAGAACTGGGTTGcatctcattttcattttatccgCTCGctttcctgatttttttttttttttttttttttt

Function

NR:

description
PREDICTED: cold-inducible RNA-binding protein B-like isoform X2

GO: NA

KEGG:

id description
K13195 CIRBP; cold-inducible RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005978 True 1206 mRNA 0.53 8 13561072 13567481

Neighbor

gene id symbol gene type direction distance location
AMCG00005976 NA coding downstream 27188 13530876 ~ 13533884 (-)
AMCG00005953 NA coding downstream 98512 13462216 ~ 13462560 (-)
AMCG00005952 NA coding downstream 164388 13393658 ~ 13396684 (-)
AMCG00005924 slc25a42,LOC108239543 coding downstream 173678 13385183 ~ 13387394 (-)
AMCG00005945 tmem161a coding downstream 276344 13279303 ~ 13284728 (-)
AMCG00005970 atp5d,LOC107554819,LOC106613744,LOC107719603 coding upstream 147503 13714984 ~ 13718428 (-)
AMCG00005969 NA coding upstream 184507 13751988 ~ 13761430 (-)
AMCG00005972 stk11 coding upstream 205001 13772482 ~ 13785885 (-)
AMCG00006003 sugp1,LOC107729615,LOC107563402 coding upstream 225881 13793362 ~ 13800830 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding upstream 246711 13814192 ~ 13827586 (-)
G155503 NA non-coding downstream 77053 13466970 ~ 13484019 (-)
G155502 NA non-coding downstream 95484 13464455 ~ 13465588 (-)
G155431 NA non-coding downstream 286379 13273640 ~ 13274693 (-)
G155429 NA non-coding downstream 293910 13266963 ~ 13267162 (-)
G155426 NA non-coding downstream 308583 13252122 ~ 13252489 (-)
G155521 NA non-coding upstream 107728 13675209 ~ 13677337 (-)
G155550 NA non-coding upstream 218525 13786006 ~ 13787634 (-)
G155591 NA non-coding upstream 309242 13876723 ~ 13881170 (-)
G155593 NA non-coding upstream 316110 13883591 ~ 13884628 (-)
G155652 NA non-coding upstream 521855 14089336 ~ 14092457 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 404754 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 509353 13036424 ~ 13051719 (-)
AMCG00005936 march2 other downstream 589666 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other downstream 611105 12920123 ~ 12949967 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other downstream 706269 12843765 ~ 12854803 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other upstream 986 13568467 ~ 13583351 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other upstream 96583 13664064 ~ 13698534 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 591650 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 769410 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 941752 14509233 ~ 14509614 (-)

Expression


Co-expression Network