AMCG00005982


Basic Information

Item Value
gene id AMCG00005982
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13926910 ~ 13932804 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005982
ATGCAGGTTTGCAGTTATTCGAAGAAAGTGGCAAAAGGGAAGGGAAAAGGCATGGCCAAAGAGAGCCTGAAGGGCCCGGAGGTGTGCAAGGACCCAGTGAAACTGACTTCTCACGCGATGGGGGTCAACATCTACAAGACGGGCCAGGATCCCCCGCTGAAAGCCCCCCAGGAATACCCCGACTGGCTTTTCCAGCTGGACCTGGGACCCCCCAAGAAGCTGACAGAACTGGACCCCGAGAGCCACAGTTACTGGAAACTGCTGCGGAAAGAGCACATGTGGCGTTTCAACAGACTCCACAAGGGCAAGAAGCTATAG

Function

GO: NA

KEGG:

id description
K17435 MRPL54; large subunit ribosomal protein L54

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005982 True 318 mRNA 0.56 3 13926910 13932804

Neighbor

gene id symbol gene type direction distance location
AMCG00005983 NA coding downstream 2048 13917335 ~ 13924862 (-)
AMCG00006004 NA coding downstream 84948 13830917 ~ 13841962 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding downstream 99324 13814192 ~ 13827586 (-)
AMCG00006003 sugp1,LOC107729615,LOC107563402 coding downstream 126080 13793362 ~ 13800830 (-)
AMCG00005972 stk11 coding downstream 141025 13772482 ~ 13785885 (-)
AMCG00005999 NA coding upstream 160096 14092900 ~ 14136611 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding upstream 241041 14173845 ~ 14179120 (-)
AMCG00005996 LOC106613681 coding upstream 254444 14187248 ~ 14198914 (-)
AMCG00006012 NA coding upstream 316987 14249791 ~ 14256738 (-)
AMCG00006014 NA coding upstream 331584 14264388 ~ 14272009 (-)
G155593 NA non-coding downstream 42282 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 45740 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 139276 13786006 ~ 13787634 (-)
G155521 NA non-coding downstream 249573 13675209 ~ 13677337 (-)
G155503 NA non-coding downstream 442891 13466970 ~ 13484019 (-)
G155652 NA non-coding upstream 156532 14089336 ~ 14092457 (-)
G155655 NA non-coding upstream 233375 14166179 ~ 14166404 (-)
G155701 NA non-coding upstream 367671 14300475 ~ 14305697 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 386175 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 436957 14369761 ~ 14370182 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 228376 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 343559 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 770592 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 875191 13036424 ~ 13051719 (-)
AMCG00005939 LOC100697221 other downstream 976943 12920123 ~ 12949967 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 226327 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 404087 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 576429 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 746993 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 849702 14782506 ~ 14784280 (-)

Expression


Co-expression Network