AMCG00005983


Basic Information

Item Value
gene id AMCG00005983
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13917335 ~ 13924862 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005983
ATGATGTTGCATGTATCTGCACAGTGCACCGAGAGAGAAAACAACGCAAATGTCATAGTAGCTCCGACACTTGACATCCGGCACGCAAGTGAAGGCAGCCCTGGCCAGAAGATGGGCGACTGGAACCTGCCCCTGGGGACTCTAGGAGAAGGAGTCCTGAGCCGGCTGTCCGACATGCTGGACAATTCCACATGTGGCTGGAGACAGCTGGCCACCGCCGTCACTGACCAGCCCCATCTCCGGTGCAGTGAGAAGGAGCTGATGAACTGCTCCCTGCAGGTCCTCAGTGCCAAGGGTAGCCCTAGCCGCAGCCTCCTGGCCAAACTGGCCGACCGCTCTTGCTCCCTGGGCGTTCTGCTGCAGTGCCTGAAGAAGATGGACCACAGGGAGGCGGTGCGCTACCTCACTGACACAGTGGCGGGTTCAGCGGGGCACATCAGCATCCTGGTGCAGCCGCGATCCCAGAATGCCCCGGAGGGCGGGCGGCTGATGTTGACCTGCCGGGCCAGCAGTTCCCCTGAGCTGGTCTTCAGCCCCCTCAGTGCAGCTCACAACGGCTACTACATCTGCCGCATCAGCCAGGGGGATCAATTCCTCTTCTCCCAATGGGCCAAGGTCAGCGTGGCCCAGACCCTCCTCCAGGCCAGCTTCCTGCCCTCCACCGTGAGTGGCCTGCGCATCACCACCCAGCCCTGGCCAATGGAAGTGGCCGAGCGTGACCTTCTTCTCCTGGAGTGCGTAGCTGAGggcaacccccccccacagtaCCAGTGGTACCACAACAAGGAGCCCGTGTCTCAGGCCCACCAGTCCTGTCTGAAGATCAACTGCGTGACAACAGCGGACAGAGGGACATACAGATGCAGGGTGTATAACCTCTACCACGAGCTGTGGAGCGACCCAGTGCATGTGGAGATCGGTCCTGGCTCCGTCTCCGATGAAGAGAGAGATCCAGGTTTTGTGCCCAGCCCGGCTCGTCAGCTAAGTCGTTTCTACGCCACAGACAAGGTGGCCCTCCTGATGGGCAACATGAACTACCAGCATCACCGGCAGCTCAGAGCGCCCATGGCGGACGTCCACGAGCTCACCAACCTGCTGCGCCAGCTGGACTTCAAGGTCGTATCCCTGCTGGACCTGGACAGACACGAGATGCAGAGCGCAGTCACGGagttcctgctgctgctggacagAGGGGTGTACGGGCTGCTGTACTTCGCTGGTCACGGCTACGAGAACTACGGCAACAGCTTCATGGTGCCCATCGACGCCCCCGCTTCTTACACCTCGGAGCACTGCCTGTGGGTGCAGGACGTGCTGCAGCGCATGCAGGAACGCAAGACGGGCCTCAATGTTTTCCTGCTGGACATGTGTCGCAAACGGAATTTCAACGATGACATCATTCCCCAGCCCGGGCCGCTGAAGGTGACGGCGAACATTGTGTTCGGATACGCCACGTGTGTCGATGCCGAGGCCTACGAAGTGAATAAAGGCTCCCTGTCGAATGGGATCTTCATCAGCTTCCTGAGACAGCGCCTCCTGGAGGACGAGAAAGTCACAGTCATGCTGGACAGAGTGGCTGAAGACATGGGCCAGTGCGAGATCACGCGGGGCAGGCAGGCTCTGGAGCTGCGCAGTAACCTGTCGGAGAGGCGAGCACTCACCGACCGCATCCAGGGCTCTGACTGTCCTGAGGCCACCTCCGCACGCAACCTGCAGTGGGCCATCGCACACGTGCTCCCGGAGAGAAAGTACCTGCAGTTTGACTGTGGCGTGAGGGTGCAGCTGGGCTTCGCTGCTGAGTTCTCCAACATCATGATCATCTACACCCGCGTCCTGGAGAAGCCTGCCAACGTCCTGACCTGCAGCGCCCAGCTCACCGACTTCTCAGAGGGGCTGGAGGTGGACCTGAAGATGACAAACCAGGAGAGCCCCCAAGACGCTGGCAGCCTGCTGTTCACATTGGACAACCTGCCTTTCCCAGAGCCCGTGTGTCTGTACACCCGCCTCAGCGCCCTGCAGAGACTCAAGAAGGACCTCACCTTCACCGTGTGCCTCCACTACCAGTACTCCAACATGGACGAGGAGGTCCAGGAGCGACAAACGGTCACCGTAGGCAAACCACTGGTGGCCAAACTCAACCTCCACGAGCCCCGGCAGCCgtacccctcctcctcctccatctcctcctccacctcctccttcGACCTGCGCTCCCTCAGCCTCGCAGAGTCCTCCTCCTTCTCCGAGTGCCTGGAGAGCGGAAGCCTGGCCAGCTTCCCGGCGTCCGAGACGTCTTCCGTGGGCTCGGCCTCCACCTGCTGGTCCTACTACTCGCACCCAGGGGACTTCCCCGACACTACCGCCCCCAGGAAAGTCAACCTGCCGGAGGAGACTCTCAGCCCCGAGTTCCTGGATGAGGACCGGCCCAAGTCGCTCTCAGAGAAACCCCTCAGCCTGCCCCATGAACACTTAGACGACCTCACCTTCAGCTTCCATAGCAAACAAAACTTCCACTCCTGCTAGTGTGTTTAACCACGGGTACTGCATATGCACTCAATCTGCCATGTATGAGTGCCACCCACCTTtgtatagtgtttttttgttttgttttattcaattatgGCTGCTGAAAGTGAAACGCCATTCTGTTTAGTTAAATtcataatgaatgaatgagtttAAATAACAGAATTAATAAGTGCCTTAACACGAACTGGCGATGCCTTTCGTAAGTCATTTACAGACTCttaactgaaaagaaaactgaaacaccAGTGTTAACAGCGATATTGACCAAATTGTAAGCTAGGGATTATTTATAACTGGGCTGAGTAACATTTTatgccattttgtttgtttattaaaagcTTTTAGGGTTTTGAGGGGGAATTCCAATTAGatattgtaattttattcattaaaaaaaatcaaaagcc

Function

GO: NA

KEGG:

id description
K07369 MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005983 True 2936 mRNA 0.57 17 13917335 13924862

Neighbor

gene id symbol gene type direction distance location
AMCG00006004 NA coding downstream 75373 13830917 ~ 13841962 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding downstream 89749 13814192 ~ 13827586 (-)
AMCG00006003 sugp1,LOC107729615,LOC107563402 coding downstream 116505 13793362 ~ 13800830 (-)
AMCG00005972 stk11 coding downstream 131450 13772482 ~ 13785885 (-)
AMCG00005969 NA coding downstream 155905 13751988 ~ 13761430 (-)
AMCG00005982 NA coding upstream 2048 13926910 ~ 13932804 (-)
AMCG00005999 NA coding upstream 168038 14092900 ~ 14136611 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding upstream 248983 14173845 ~ 14179120 (-)
AMCG00005996 LOC106613681 coding upstream 262386 14187248 ~ 14198914 (-)
AMCG00006012 NA coding upstream 324929 14249791 ~ 14256738 (-)
G155593 NA non-coding downstream 32707 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 36165 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 129701 13786006 ~ 13787634 (-)
G155521 NA non-coding downstream 239998 13675209 ~ 13677337 (-)
G155503 NA non-coding downstream 433316 13466970 ~ 13484019 (-)
G155652 NA non-coding upstream 164474 14089336 ~ 14092457 (-)
G155655 NA non-coding upstream 241317 14166179 ~ 14166404 (-)
G155701 NA non-coding upstream 375613 14300475 ~ 14305697 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 394117 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 444899 14369761 ~ 14370182 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 218801 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 333984 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 761017 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 865616 13036424 ~ 13051719 (-)
AMCG00005939 LOC100697221 other downstream 967368 12920123 ~ 12949967 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 234269 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 412029 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 584371 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 754935 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 857644 14782506 ~ 14784280 (-)

Expression


Co-expression Network