AMCG00005988


Basic Information

Item Value
gene id AMCG00005988
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12662352 ~ 12665106 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005988
CGGGCGGGTTGCTCTTCATGATCCGTGTAAGCGATGGAGGTGGCGTCTCCATTGAGTAAAACGGACCATTATTTTGCGTTTTCAGAGCCATAAGAAAGCCGGTGCCCTGTGGAGAGATGCCGAATTAAGCAGGACACGTTTGTGACGGAGATGAAAGTTTAATTCACTCTGGAAAATTACTCGGGGAAGACCAGCGAAATGAACATGACTTCGGAGGAGCTCTACAGGCAGTTGGACAAACTGATAAAGGAGAAGGCAGACAACCAAAGAATATATGACTGGGTGGAGGCCAACCTGGACGAGCAGCAGATCTCCTCCGCGGTGTTCGTCAGGGCAGTGATGACGTCGGTGTGTCAGTCTGCCATCAGCTCTGAGAATCCGTACAAAGTGGACATGAATCAGAGAGTCCCGCTCCTGCAGAAGTACCTCACGGATGAGCAGAAGGAGCTGCAGGGCCTCTATGCTCTTCAGGCCTTGATGGTGAAGATGGAGCAGCCAGCGAATCTCTTGCGGACGTTCTTTGACACGCTGTACGATGAAGACATCATTAAGGAGGAGGCCTTCTACAAATGGGAGACCAGTCCAGACCCGGCGGAGCAGCAGGGCAGGGACACGGCGCTCAAGTCCGTCACCGCCTTCTTCACCTGGCTCCgcgaggatgaggaggaggactGACGCGGCTGGCGATAGCAATGGAACATTTTGATTCCTGTTTGGAATACGcccatctgtcttttttttttttctctctcctacAATTAACATGGGTGCCCTCAAAAACGtgaaagaatataaagaaattgaaaaagaagCAGCACAGATCCTAGATATTATTAGAGTGAATTCTGCTGAGGCCAAGTGGAAATTTATTTCAGgacagttgtgtgtgtatatatatatatatatattgtttgttttccttattttattatttttcaaaaataaaataaatgaagtaa

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005988 True 959 mRNA 0.47 6 12662352 12665106

Neighbor

gene id symbol gene type direction distance location
AMCG00005923 LOC103464111,LOC103138520,LOC102237431,LOC107100952,LOC103373679,LOC105900972,LOC100702697 coding downstream 20161 12628716 ~ 12642191 (-)
AMCG00005916 NA coding downstream 252159 12365732 ~ 12410193 (-)
AMCG00005917 hiat1a,mfsd14a,LOC108413745,LOC107738165,LOC107659405,LOC102785602 coding downstream 299476 12349245 ~ 12362876 (-)
AMCG00005918 NA coding downstream 321854 12335317 ~ 12340498 (-)
AMCG00005919 NA coding downstream 336089 12325100 ~ 12326263 (-)
AMCG00005991 NA coding upstream 52472 12717578 ~ 12722749 (-)
AMCG00005990 sppl2b,sppl2 coding upstream 61741 12726847 ~ 12735907 (-)
AMCG00006064 NA coding upstream 81823 12746929 ~ 12759443 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding upstream 207805 12872911 ~ 12880597 (-)
AMCG00005938 hnrnpm,LOC105900966 coding upstream 216679 12881785 ~ 12890475 (-)
G155235 NA non-coding downstream 50907 12605723 ~ 12611445 (-)
G155183 NA non-coding downstream 214633 12447520 ~ 12447719 (-)
G155073 NA non-coding downstream 536224 12125161 ~ 12126128 (-)
G155058 NA non-coding downstream 638680 12003140 ~ 12023672 (-)
G155284 NA non-coding upstream 81317 12746423 ~ 12746716 (-)
G155326 NA non-coding upstream 226001 12891107 ~ 12891358 (-)
G155331 NA non-coding upstream 243588 12908694 ~ 12910923 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding upstream 363098 13028204 ~ 13033408 (-)
G155391 NA non-coding upstream 414379 13079485 ~ 13107493 (-)
AMCG00005875 NA other downstream 1285814 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 1301478 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 1323217 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 1337284 11320260 ~ 11325068 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 1796556 10849515 ~ 10865796 (-)
AMCG00005989 NA other upstream 4150 12669256 ~ 12675994 (-)
AMCG00005992 NA other upstream 13299 12678405 ~ 12711136 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 178659 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 231448 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 255017 12920123 ~ 12949967 (-)

Expression


Co-expression Network