AMCG00005991


Basic Information

Item Value
gene id AMCG00005991
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12717578 ~ 12722749 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005991
ATGGATCTGAAGAAGGACCTGGACAAACAGGCCATAATGGGCCCCCCACTCAGCCACTTCTACGACTCTTCCTGCTGCAAGGCCCTGACTGCGGCTTTGCTCCTGGTCTTCCTCACCATTGGGGTCTTCATCAGCATCCTGATTGTGTACCTTGTTAAAGAAGAGCACAGTTACGTGGAGACTGTGGAACTGAGAGGCCTCAAGTATGACACCAGCTTACAAGACGAGACCTCCGCATACCCCACTGTGCTCTCGTCCGCCCTGAGGAGCATGATGAGACGTACCTTCATGGCTTCATCAATCGCGCACACTTTCAAGGAcagtaatattttaaactttggGAACAACAATGGCAGTGTGATGGCGACCTTTCAGGTGACCTTCAAAGTAGAGAGGGTGCGTGGGTTGTCGGACGCGGTTGTTCAGGATGTCCTGCACCTGGGGCTGGACTCCATGCTTCAAGGGCGCCCCGTAAAGGTGTCCGATTTTGGGGAGATCACTTCCATCATCCTAAGAGGAGCAACTGGGAAATCCTTTTTGAACACAGGAGAAAGAGCAGACCACTGTCCAGCCAACGCCTTTACCTGTCAGAACGGGGATTGCATTACGAAGGTCAACCCTGAGTGTGACTTCACGCCTGACTGCGCAGACACTTCCGACGAGGCCCAATGTGCTTGTGGTACCCAACCGGCCCATTCCACTCGGGTGGTGGGGGGCGTGGAGGCCAAGCGCGGCGAGCTCCCCTGGCAGGTCAGTCTGAGGCTGAAGGGTGTTCACACCTGCGGGGCATCCATCGTCAACAAGAGGTGGATTGTTAGCGCCGCTCACTGCTTCGAGAGAAGTAAAGACCCACGGGATTGGAAGGCCCTTGTGGGGGCGAATATGGTGTTTGGAGGAGAGCCTCAGTCCAGGTTGATCAACATCAAATCCCTGATAGTCACTCCAGACTATGACCAGCTGACCAGCGACAACGACGTGGCGGTGCTGGAGCTGGAGACGCCCCTGACCTTCAGCCCCTACATCCAGCCCATCTGCCTGCCCGCCCCTTCCCATGTCTTCTTCCCAAAGCAGCGTTGCATAGTGTCGGGCTGGGGGCAGCTCAGCCAGTACAGCAgtaAGATGCCCAACTTCCTCCAGAAGGCTGTGGTGGAGATCATTGACACAGACACCTGCAATGCTGACGCTTCCTACAAAGGGGCTGTCACTGACAACATGATGTGCGCCGGCTACCTGACGGGCAAAACGGACTCCTGCCAGGGAGATTCTGGAGGGCCACTGGTTTGCGAGGAGGCCCCAGGCCGGTTCTTTCTGGCTGGGATAGTGAGCTGGGGAGTGGGTTGTGCCCAGATCAACATGCCCGGCGTCTATTCTCGAGTTACTCGTCTACGAAAATGGATCCTCATCTATACCAACCCTGGGCCCACTTATATTGCTGGAccaactaccaccaccaccactactactgcCTCCACAGCTGTCAAGACAGTCCCGAAACCCCGTCCCATAGCAGCTGCAAATTGTACTAACAAGTACAAATGTGCGAAAGGCGTGTGTATTAGCAAAGTCAACGCCGAGTGTGATGGAGTTATGGATTGCATCAATAAAGCTGACGAGAGGAACTGTGACTGTGGGGACAGGCCAGTGATTGGCTCGCAGAGGATCGTTGGGGGTGTGTCCGCGCGGAAGGGGGAGTGGCCGTGGATGGCCAGCCTGCAGTTCCAACGCACTCACCGCTGCGGGGCGACGCTCATTCACAGCAAGTGGCTCCTCACCGCTGCCCACTGCTTCAGCAATCAGCTGAGCCCAAACAGCTGGACGGCCAGCCTAGGCTCCCTGTTGTACCTGGGGAAAGAGGTGATTGTGATCCCCGTGCGACGCATTATCCTGCACCCCAACTACAACATCACCGACATGAACTTCGACGTGGCACTCCTGGAGCTGGCGGTGCCTGCCCCGCGCACCCCCACCATCCGGCCGGCCTGCCTGCCCTCGCCAGCACACAGCTTCCCCGAGCGGGCAGAGTGTTTCATCACAGGGTGGGGCACGCTGAAGGAGGGGGGGCCACCGGCCAGCACCCTCCAGAAAGCGATGGTCAGAATCATCAGCCAGTCAGAGTGCCGGCAATCCTACGCCAATGGGCTGACCAGCAGCATGATGTGTGCCGGCTTCATGGAGGGTGGCCCAGACACCTGCACGGGCGACTCCGGTGGACCCCTGTCCTGCCAGGAGCCGTCGGGCCGCTGGTTCGTGGCCGGGGTCACCAGCTGGGGCAGAGGCTGTGGCCGCCATTGCTTCCCCGGAGTGTACGTGCGAGTCACCGAGGTCAGAGAGTGGCTCTCCACATACCTGCCTTTCTAG

Function

GO: NA

KEGG:

id description
K09640 TMPRSS9; transmembrane protease serine 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005991 True 2358 mRNA 0.58 15 12717578 12722749

Neighbor

gene id symbol gene type direction distance location
AMCG00005988 NA coding downstream 52472 12662352 ~ 12665106 (-)
AMCG00005923 LOC103464111,LOC103138520,LOC102237431,LOC107100952,LOC103373679,LOC105900972,LOC100702697 coding downstream 75387 12628716 ~ 12642191 (-)
AMCG00005916 NA coding downstream 307385 12365732 ~ 12410193 (-)
AMCG00005917 hiat1a,mfsd14a,LOC108413745,LOC107738165,LOC107659405,LOC102785602 coding downstream 354702 12349245 ~ 12362876 (-)
AMCG00005918 NA coding downstream 377080 12335317 ~ 12340498 (-)
AMCG00005990 sppl2b,sppl2 coding upstream 4098 12726847 ~ 12735907 (-)
AMCG00006064 NA coding upstream 24180 12746929 ~ 12759443 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding upstream 150162 12872911 ~ 12880597 (-)
AMCG00005938 hnrnpm,LOC105900966 coding upstream 159036 12881785 ~ 12890475 (-)
AMCG00005967 polr2e,LOC107599482,LOC107669821 coding upstream 299612 13022361 ~ 13025617 (-)
G155235 NA non-coding downstream 106133 12605723 ~ 12611445 (-)
G155183 NA non-coding downstream 269859 12447520 ~ 12447719 (-)
G155073 NA non-coding downstream 591450 12125161 ~ 12126128 (-)
G155058 NA non-coding downstream 693906 12003140 ~ 12023672 (-)
G155284 NA non-coding upstream 23674 12746423 ~ 12746716 (-)
G155326 NA non-coding upstream 168358 12891107 ~ 12891358 (-)
G155331 NA non-coding upstream 185945 12908694 ~ 12910923 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding upstream 305455 13028204 ~ 13033408 (-)
G155391 NA non-coding upstream 356736 13079485 ~ 13107493 (-)
AMCG00005992 NA other downstream 6442 12678405 ~ 12711136 (-)
AMCG00005989 NA other downstream 41584 12669256 ~ 12675994 (-)
AMCG00005875 NA other downstream 1341040 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 1356704 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 1378443 11336595 ~ 11339135 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 121016 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 173805 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 197374 12920123 ~ 12949967 (-)
AMCG00005966 sbno2,LOC106573581 other upstream 313675 13036424 ~ 13051719 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other upstream 400808 13123557 ~ 13156318 (-)

Expression


Co-expression Network