AMCG00005992


Basic Information

Item Value
gene id AMCG00005992
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12678405 ~ 12711136 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005992
ATGGTGCAAATATCTAGCTCCCTCGGAGGGCACTGGGAGGAGCCAGTCCAGTTGGAGACAGGGGTGTCCTCCAGGGCATCGTCAGGGCTGAACCCCGTCATCATCTCGGCGCTGTCCAGAGACGGATCCCCTGGCTGGGCTGAGGACACGGCCACACCGCACACCAACAGCAATGACAATAAGAAATGCCAGTACAGAAGGGCACAGAAAGCTGCCACTTGCAAGGGCTATACATTCCTGCCTAGAAATAACGAAACAACCCTGAGAGATGCCCTAGCTGTCATCGGGCCCATCGCTGTGTCTGTTGATGCCAGCCAAAAGACCTTTCACCTGTACCGTTCTGGTATTTACTACGACCCCAAATGCTCCCACAACACTTCCCATGCAGTCTTAGCAGTGGGATACGGGATCTCCTTTTTCCAGTCAGGAAACCGCCATCCCAATAAGTACTGGATCTTGAAGAACAGCTCCCTCGGAGGGCGCTGGGAGGAGCCAATCCAGTTGGAGACAGGGGTGTCCTCCAGGGCATCATCAGGGCTGAACCCTGTCATCATCTCGGTGCTGTCCAGAGACGGATCCCCTGGCTGGGATGAGGACACGGCCACACCGCACACCAACAGCAATGTCAGAGCCGCCTGCATTAAAGGTTTCCTGGTGTTAAATGAATACAGCCTTTAA
>TU195581
NNNCCTGGGAGTGCTCCAGGTTGTGCTGCTCGATGAAACGCAGGTTCTCCTCCCAAATCTGCCTCCTGTAGCCCTCAGAGTCCTCCTCAGTGTACTGCTTGCCATGCAGAGTCTTCCAGTCTGCCCAGGTGCTGTCCAGAGACGGATCCCCTGGCTGGGATGAGGACACGGCCACACCGCACACCAACAGCAATGTCAGAGCCGCCTGCATTGTGTGAACCTGAGGCAGAGATCAGAGAACCGGAGGAGAGAACTCTtgtctgaaaatgtacaatggTTGATTTGCATGTACGCTCTTACAATAAATGGTGCAATATAGAACCAAAAAGGGTTCCATGACTCACTT
>TU195584
GACAATAAGAAATGCCAGTACAGAAGGGCACAGAAAGCTGCCACTTGCAAGGGCTATACATTCCTGCCTAGAAATAACGAAACAACCCTGAGAGATGCCCTAGCTGTCATCGGGCCCATCGCTGTGTCTGTTGATGCCAGCCAAAAGACCTTTCACCTGTACCGTTCTGGTATTTACTACGACCCCAAATGCTCCCACAACACTTCCCATGCAGTCTTAGCAGTGGGATACGGGATCTCCTTTTTCCAGTCAGGAAACCGCCATCCCAATAAGTACTGGATCTTGAAGAACAG
>TU195586
AGTGTACTGCTTGCCATGCAGAGTCTTCCAGTCTTCCCAGGCGCTGTCCAGAGACGGATCCCCTGGCTGGGCTGAGGACACGGCCACACCGCACACCAACAGCAATGTCAGAGCCGCCTGCATTATGTGAACCTGGGCCAGAGATCAGGCACCTGTAAATGTACAAAGACTCAGTGCTCAGAGCTCAGAGACACCTCTCCGAGACTGGAAACTGGCACCTTTTATAGCTGCTGGTCCCAGATGCTCAATGGTTATGATTGGTCTGTGGCCCTG

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005992 True 678 mRNA 0.55 8 12678405 12711136
TU195581 False 346 lncRNA 0.52 2 12695699 12696319
TU195584 False 293 lncRNA 0.49 2 12702137 12702641
TU195586 False 273 lncRNA 0.55 2 12706458 12706966

Neighbor

gene id symbol gene type direction distance location
AMCG00005988 NA coding downstream 13299 12662352 ~ 12665106 (-)
AMCG00005923 LOC103464111,LOC103138520,LOC102237431,LOC107100952,LOC103373679,LOC105900972,LOC100702697 coding downstream 36214 12628716 ~ 12642191 (-)
AMCG00005916 NA coding downstream 268212 12365732 ~ 12410193 (-)
AMCG00005917 hiat1a,mfsd14a,LOC108413745,LOC107738165,LOC107659405,LOC102785602 coding downstream 315529 12349245 ~ 12362876 (-)
AMCG00005918 NA coding downstream 337907 12335317 ~ 12340498 (-)
AMCG00005991 NA coding upstream 6442 12717578 ~ 12722749 (-)
AMCG00005990 sppl2b,sppl2 coding upstream 15711 12726847 ~ 12735907 (-)
AMCG00006064 NA coding upstream 35793 12746929 ~ 12759443 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding upstream 161775 12872911 ~ 12880597 (-)
AMCG00005938 hnrnpm,LOC105900966 coding upstream 170649 12881785 ~ 12890475 (-)
G155235 NA non-coding downstream 66960 12605723 ~ 12611445 (-)
G155183 NA non-coding downstream 230686 12447520 ~ 12447719 (-)
G155073 NA non-coding downstream 552277 12125161 ~ 12126128 (-)
G155058 NA non-coding downstream 654733 12003140 ~ 12023672 (-)
G155284 NA non-coding upstream 35287 12746423 ~ 12746716 (-)
G155326 NA non-coding upstream 179971 12891107 ~ 12891358 (-)
G155331 NA non-coding upstream 197558 12908694 ~ 12910923 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding upstream 317068 13028204 ~ 13033408 (-)
G155391 NA non-coding upstream 368349 13079485 ~ 13107493 (-)
AMCG00005989 NA other downstream 2411 12669256 ~ 12675994 (-)
AMCG00005875 NA other downstream 1301867 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 1317531 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 1339270 11336595 ~ 11339135 (-)
AMCG00005876 oaz1,oaz1s other downstream 1353337 11320260 ~ 11325068 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 132629 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 185418 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 208987 12920123 ~ 12949967 (-)
AMCG00005966 sbno2,LOC106573581 other upstream 325288 13036424 ~ 13051719 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other upstream 412421 13123557 ~ 13156318 (-)

Expression


Co-expression Network