AMCG00005996 (LOC106613681)


Basic Information

Item Value
gene id AMCG00005996
gene name LOC106613681
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14187248 ~ 14198914 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005996
ATGAGAATAGGAGGTTCTGCACATGCGCACATCGACCAAGAGCTCCGCAATGTCATCGATAAATTGGCTCAGTTTGTGGCCCGAAATGGGCCGGAGTTTGAGAAGATGACAATGGAGAAGCAGAAAGAGAACCCCAAGTTCTCGTTCCTGTTTGGTGGGGACTTCTTCAGCTACTACAAGTACAAGCTGGCCATAGAGCAGCAACAGCtgctcTGTAAACAGCCAGGACAGGAAGTCCCTGATGCTCCTCCACCACTGAGCATCCTGCCACCTCCCCCCATCGCCCCGGCCACACCCTCTGTAGAGGAGCTCGTCCAGCAGAGCCAGTGGAACCTTCAGCAGCAAGAGCAGCACTTGCACAGCCTCCGCCAGGAGCAGGTGACGGCCGCCATCGCCCTGGCCATGGAGCAGCAGACTCAGAAGCTGCTGGTGGAGACTCAGCTGGACATGGGCGAGTTCGACAACTTGCTGCAGCCGATCATCGACACCTGCACGAAGGACGCCATTTCGGCCGGGAAGAACTGGATGTTTAACAATGCCAAGACGCCCCCGCACTGTGAGCTGATGGCAGGGCATCTGCGCAACCGCATCACAGCCGAAGGGGCTCATTTTGAGCTGTGCCTGCACCTCATCTATCTCATCAACGATTGTCGTTCCTCATGTCTAATCCAGCTGCTGCAGCTCTGGGAAAAGAATGGGTACTTCGATGAAGCCACCATCCAGCAGCTCCAGAGTCCGGCCCTGGGGCTGGGCCAGTATCAGGCGTCGCTCATTACAGAGTATGCCGCAGTGGTGCAGCCCGTCCAGCTGGCCTTTCAGCAGCAGATTCAGACTCTGAAGACTCAGCATGAAGAGTTTGTTGCCAGTCTGAAGCAGCAGCAGACGGCAGCGGCGGCGGCACAGCTGGTGCCACCGGAGGCCGACTTGAAGCCAGCTACCCCAGGGACAGCTGTGACCTCCCAGCCTGGGGATGTCAAGGCGgccctgtctgtccctcccccaggGGAGTATGACACGGCCCAGCCTGGAGCTCAGGACCCCCTGGGCGGGGCCGCACCGCGAGGACCCGGAGACCCCATCCCCCCCGGCAAGCCAAACTGGTTTGACCCACAGCACAACCTCTCCGCGTGGCCCCAGCAACAGCCGCCTCCGTTTGACCCTACCCAGGGCCCCCCGCCGTGCCCGCCCTGGAACAGCCACGAGGGCATGTGGAACGAGCAGCGGGACCCGAGCTGGAGCGGCCAGCGGGAGAGCGGGCCCTGGAGCGGCCAGCCCGAGCCCCCCGCATGGAGCGGCCAGTACGAGGCGCCCTGGAGCAGCGCGCCCGAGCAGCCGCCCTGGGGTCAGAGGGAGCCTCCCTTCCGAATGCAGCGCCCCCCGCACTTCCGAGGCCCATTCCCTCCCCACCAGCAGCCCCCCCAGTTTAACCAGCCCCCCCATCCGCATAACTTTAACCGCTTCCCACCGCGCTTCATGCAAGACGATTTCCCACCGCGCCATCACTTTGAGCGGCCCCCCTACCCGCCTCATCGCTTTGACTACCCACAGGGAGACTTCCCTGGAGATCTGGGTCCTCCTCACCACCACCCTGGTCACAGAATCCCACCCCCTGGGATGGGAGAACACCCTCCTTGGGGAGGTCCCCAGCACCCAGACTTCGGCCCCCCACCCCACGGCTTTAACGGCCAGCCCCCACACATGAGGCGGCAGGGCCCCTCCCACGTCAACCATGACGACCCCAGCCTGGTCCCCAATGTCCCGTACTTTGACCTTCCCGCTGGACTGATGGCCCCTCTGGTCAAActtGAAGACCACGACTACAAGCCTTTGGATCCCAAAGACATCCGCCTCCCGCCCCCAATGCCCCCCAGCGATAGACTTTTGGCAGCCGTCGAGGCCTTCTACAGCCCCCCCTCTCATGACAGACCAAGGAACAGCGAGGGCTGGGAGCAGAATGGACTGTATGAGTTTTTCAGAGCTAAAATGAGAGCCCGGAGGAAAAAGGGCCAGGAGAAACGGAACAGCAGTGCCCGGGGCAGCCGCTCCCACAGTCGCTCTCGGAGTCGGGAAAGGTCCTCCTCGCGCTCCAGCTCCAGATCCTCCAAATCGTCGCGCTCCTCTTCCGCCACGGGCTCCCACTCGCGCTCTCGGTCCCGCTCCCGCTCTTACTCCCGCTCCCACTCCAGGAGCAGGAGTGGCTCTCGTTCTTCCCGAAGCCGATCCCGTTCCAGATCCCGCTCCCGCTCTCGCTCCTACTCCCCCGACAAGAAACGCCGCAGCAAATCCAGGAGTCCCACTCCCCCCTCCACCTCCGGGCTGGGCGCTGCCCCAGCGCCGCTGCCAACCGAGCCGAGACTGGGTGAGGAGAACAAGGGACACCAGATGCTCATGAAGATGGGCTGGAGTGGCTCTGGCGGGCTGGGGGTCAAGGAGCAGGGCATCCAGGACCCTATCAAAGGAGGAGAAATTCGGGACAAGTGGGACCAGTACAAGGGAGTGGGAGTGTCCCTAGATGACCCGTATGAGAACTACCGCAGAAACAAGAGCTACTCCTTCATCGCCCGAATGAAGGCAAGGGAGGAGGTCAACCGGGAACCCCAGGAGCCACCTGCCCCAGAGTAG

Function

NR:

description
PREDICTED: calcium homeostasis endoplasmic reticulum protein-like isoform X3

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12841 CHERP; calcium homeostasis endoplasmic reticulum protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005996 True 2622 mRNA 0.62 17 14187248 14198914

Neighbor

gene id symbol gene type direction distance location
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding downstream 8128 14173845 ~ 14179120 (-)
AMCG00005999 NA coding downstream 50637 14092900 ~ 14136611 (-)
AMCG00005982 NA coding downstream 254444 13926910 ~ 13932804 (-)
AMCG00005983 NA coding downstream 262386 13917335 ~ 13924862 (-)
AMCG00006004 NA coding downstream 345286 13830917 ~ 13841962 (-)
AMCG00006012 NA coding upstream 50877 14249791 ~ 14256738 (-)
AMCG00006014 NA coding upstream 65474 14264388 ~ 14272009 (-)
AMCG00006015 cib3,LOC107687907 coding upstream 171495 14370409 ~ 14374943 (-)
AMCG00006028 NA coding upstream 184756 14383670 ~ 14391108 (-)
AMCG00006029 NA coding upstream 194540 14393454 ~ 14401173 (-)
G155655 NA non-coding downstream 20844 14166179 ~ 14166404 (-)
G155652 NA non-coding downstream 94791 14089336 ~ 14092457 (-)
G155593 NA non-coding downstream 302620 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 306078 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 399614 13786006 ~ 13787634 (-)
G155701 NA non-coding upstream 101561 14300475 ~ 14305697 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 120065 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 170847 14369761 ~ 14370182 (-)
G155754 NA non-coding upstream 223590 14422504 ~ 14424746 (-)
G155768 NA non-coding upstream 290376 14489290 ~ 14491929 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 15641 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 488714 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 603897 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1030930 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 1135529 13036424 ~ 13051719 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 137977 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 310319 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 480883 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 583592 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 799586 14998500 ~ 15007979 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_11047852_11057798 CHERP coding CI01000030 null 11047762 ~ 11057798 (+)