AMCG00005997 (rad23ab,LOC107704496,LOC107717165)


Basic Information

Item Value
gene id AMCG00005997
gene name rad23ab,LOC107704496,LOC107717165
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14159131 ~ 14171607 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005997
ATGTCTTGTCTCGACCAGCAAGTAGATGGCGTCTGACTGCGGTTCCCAGTCCACCAGTTAGAAAGCTGAGTCACAGAACTGGCGAGTTGGTAACGGTGGCCGTGAAGGAGCTGGGTATTTCGGGAGAACTTGTATCGATAATTGCCATTGCCCGGGAAGATGTTGACGATCACGCTGAAAACGCTCCAGCAGCAGACCTTTAAGATCGAGATCGACCCGGAGCTGACGGTAAAAGCGTTGAAGGAGAAGATAGAGGCAGAGAAAGGATGCGATGGTTATCCGGCCTCTGGACAGAAGCTCATCTATGCAGGTAAAATCTTAAATGATGACATACCTTTAAAAGACTACAAGATAGACGAGAAGAACTTCGTGGTAGTCATGGTTACAAAGCCAAAACCAACCTCCCCTCCACAGCCCTCCAGTCAACCCGCCCCACCCCCTGCTGTTGTGAGTGTGCCGCCgccggctgctgctgctgctgctgcccccccTGTCGCtacccctgcccctgccccagctccagccccagccccagccacCGCCCCCACACCTGCCCCTGCCCCCACACCTGCACCTGCCCCCGCCCCTTCAGAAGAATGCCCGCCTCCCAAGCCAGTTCCCCCGCCTGCAGCCCCCGTCaccagcacagacacagcagaGGCAGTGTCCGCCCCCCCCGACACCCAGACCGAAGAGAAACCGCGAGAGGAGCCCAAGGAGGAGCCTGCTGCTGCCCCCGCCACCCCCACTTCCTCCAGCATTGCGGAAGATCTGAGCCTTTTAGAAGAAGCAGCGTCTATATTAGTTACAGGACAAGCGTATGAGAATCTGGTGACCGAGATCATGTCTATGGGCTATGAGAGAGAGCAGGTCATCGCGGCACTACGGGCCAGTTACAATAACCCAGACAGAGCAGTGGAGTACCTTCTCACAGGCATTCCTGCCGAACCTGACCTCCCCCCTGGAGAAGTAGTGCGGCCCCCTCCCGCCACgaaccccaccccccagcctGCAGAGAGAGCCCAGCCTGGCCCTGCAGCCAGTGGCACTGCAGTGTCGTCCTCTGGTAACCCTCTGGAGTTCCTCAGGAACCAGCCGCAGTTCCAGCAGATGCGTCAGATCATCCAGCAGAACCCGGCGCTCCTTCCCGCACTCCTCCAGCAGCTGGGCCGGGACAACCCACAGCTGCTCCAGCAAATAACCCAGCACCAGGAGCGGTTTGTTCAGATGCTAAATGAGCCACTAGGAGAGGTAGGAGGGGAGGGTGCTGAGGGTCAAGGGGCACCGCAGACAAACTACATCCAGGTCACACCACAGGAGAAAGAGGCCATCGAGAGGTTGAAAGCCCTGGGTTTTCCAGAAGGACTAGTTATTCAAGCCTACTTTGCCtgtgagaaaaatgaaaacctggCCGCCAACTTCCTCCTGCAGCAGAACTTCGATGATGAGTAAAGACGCTCAGcagggagagagcgagggagagtgggaggggGAGCGTGCGTGAGGCCCTATGGGGACTGGGAATATCGCAGGGTCCcaggaatgcttttttttttttgtttcttttttttttgttccccgGACAAAGCCATGATGTGAAGTTCTTGAGCGAACGGCGCCAGCTCACTGTTTGAGTAATCTTGAATCACCGCGCTTCTGCATCGACGCTGCCATTCCTGCTGCTCCTGCTTTCACTCTAGGTTTACGGTGTGgcgattttttttccttcattttattcGATCTATTTCGCATTTGCTTTCTCGATCGacttattagtttttttttttaattgattaatttagttttcttgcccccccccccattccaGCTGTTACCTGTtctgagagaaagagggggggaagaaaacGCAAACATGACAATCAGATTCCGTACGAACATCACAGCTCCCGTGTGGCCGTAGTTTTTTCATGCCACCGATTATCCAATTGAAGCTACTGCTGTGTTAGTCCAGGCTCACTTAGTTGGCCGTTACCCTACAAAGAATGCCATGTATATGCAAAACCTCTTATCTGTATCATTGAGGCAAAAATAGTCAAACTCATTGAAGCCGTACATGCTTTTTTATCAGCATATCTACCCTAGACAGGAgcgatttcttattttttttaaaagctctgCGTAACCCTACAGATACCTCCTCTTCCCCTTTTGCTAAAGCAATGGAAAAGGCAACAGCGCTTTCTGGAGTATTCCTGCTGATCCTATTGCCAATAAATGATGAAGTGAAGTATATGATATATTAGGCTTGATCTCttctaatgaaaatgtattgcagcTGTGCGAAAAGGGATCcgttgtgtgcatgtgtgtccaTCTGACCAGGTGCGTAGCTGCAGGCCTACAGTATGAACTTTTGTGTGTCATCCGGCTAGTACTTAAACTGTtaatctccccccccccacaagaATATGAAGAGTTTTCTGATATCTGCGGGTTTCGGCTGGAGATTCTCTTTCCAGAAACGGAAAAGAAACCAAGCTCTCGATTTATTAACTGACTTGAGCCTTAAGCTGTATTGAAGTATGCATTTACCTTCTAGAAAAAAGCTTTTAGAAAAACTGTGCTTTTTCTATTCATGGATAGTATTGTCTAGGCTAATGTACACTActtttactgtaatttatttacaaCGGCACAACGTTTGTATGTGTTTGATGTGGATCCGTATTCTCCCCTCCAATGCAAATAGGTACACTACTTTTTTAAGTGATAGTGGGTATTAAATGGCCTCCTCGTAATGAATCACCCAGCTGCTCGTACAGTATGAAGTATCTAGTGTTTGTGCATTTGACTTacagaaatgttacatttatctgaaatgttttttttttttattactattatttaatttttgtttctgataaaaaaaaaaaaatgaatccacTAGGTAAAACCTTAATTGTATATCAATTTTACTGGCAGCTGTTATAAgggaaattgattaaaaaaaagtgaagtcACGCTGTGGTTAAAATAAGCACAGATAGCATAAACTAAATATACAGACAACTGCTTTAGGGGAACTGCATAGATAATGTTTCACTTTTTAGACAACTACGATGCTGTGATTTTTGTTTAGGCttgatgtttaatttcattCTTTTGACTAGGTAATGGACTTCTCTCGTTCACTTTCTGAAGTCTGTTGTCATTTCTGTCTAGCcctttagagagagagagtaggatTTGTCTGCATTATAACTCCTGTATAGATGCAGTCAAACCCTCGAGCATATAGGTCTCTCTACCTGTGGGAAtcttaactttattttaattgtgtcacCAGTCCGATCTCTTTGAAAATGGTCTATATCTTGGGTTTGACTGTATTTTGCTGTCTGAAGGTTACTTCTGTGCTACAAGTACATGCATGCTCTTTTAAACTGATTATTCATCTgtgctttatacattttcaggtCAAATTGAATGAATTTCACTTCCACAGTATTTAATAAGcaattgcaaagaaaaaaaaaatctgctgtaTCGAAACAGGATTGCTGATGGGCAGAAAGACCAgagatttgtgtatttttaaactgtgaaaGCAAGCCCCTTATAAACAGTGCTACTTTAACCTGTCTGCGTTGAAGCTGTTAATTGGGCTGAAACCCCTTGATTTATTGTAACTTGTCCATTGAATGTAACCAAAGAAAGTGCAACAGTGTAGAACATACCTGTCGTATACAATAGGAATCACATTTAATTCACATGAgctatgttttaatgtatgtaaaaggACTTTTCCATTTGTCTCCGTTTAGATTTTCAGTTGCCAtgagatttttttcttctcataaccagtttttatgtatgtttatttattggacTTAGGCATCTATCCCTGGATTTTCAGTGCTGGAAGAGTGAAAAATCATAGTTGTGGCCGATAGGAAACCCGTTGGtgggtgtttttctttcctattgAAAAGTGATTCGGTGAATTTGAGCATTTTGCCCCGTAGGCAGCGGACATCTCAATCAGCTGATGCAGCACATTGAGCTATCCCTGTCCTAAAATacacatctttaaaataatcgTTCTAGAGTTGAGAGATTGTTCATCTTTCACTTTTGCTTTCTTTCGTTTATGTGCATTTGCCTCCaaagaaatgtttgaaattaggtgtttttttttgttttttttttcacctcctTAAAAGCTTAATGCATCTTTCCGTGTGCAGTTCAAGTGacctgcagaaaaaacaacacttgcACACCTTCACAGCAGATTTATGTGTACGTTGAAGACCTTTTAAGATATGCAGGCCTCACAAggtttgctttcaaaaacacagcCTTGTTGATGCGTTCTGTTCATTCACACGTTTACGAAGCATCTTCCAGGTCAAGTATTATCTTTCCTCCCCCTCTGGTCTAATTGAAGTGTTGCTTTCATGTTTCATCAACATTCACCCTTTTAAGAAAGTGTCACTGATGTTTCCTAGGCAGTTTATGAAATATTCCAGTTGCAACAGATTTGCTTTTCTCTCATCATCAGCCACATGCATCACTGATCTTTGTTGCTTGCAATTAGGAGAACTGTAATTAGAATCCCCAGTAAACGTTTCCAAGGTTACAGATTGAACAGCATTGTTTGAGCGCTGCTGTATTtctcttctttattttgtttcttgcttGTCCTGTCCTGCCTGTCCTGTGAGATTCTGTTGTTTCTCCTCAGATGATTTCCCATAAGtaactattaaaatgtgtgatttgtttcCTTCTCTCCTTTAAGAGCACGTATACATGATCACACTGAAGTGTCTTTCGACCTTGTCATCTAGTTACCACAAATCCTGTGGATTTTAAGTTaccttattttattgttttcatgtgtgtgtgtgcgtgtgtgtgtgtgtataggacAAGGCTACAATCTGATGCATACACATGTAAAAGACCAAAGGGAAGAATTTGAGTTTTACACCAACCAAAGGGATCAGCTGTCTGCAATGGAAATGTCAACATTGAAGCGACGCTTAAGTTTCCCCCTAAATATTTCCTGTCCTTCAGTTCTGAAAGAGAACCCTTGCAATGGAAATTCTAAGCAGAAACAATTTTCCAGAAACGTGCATAACTTGTATACATGTAATTGGACACACAAgtcatttgaatacatttaaagtcgACACGAAATGCACCTCTGTATTAGTGTAAACTTTTAAACATTGATTCTTTTTGTTTACTCCCTAGGTTACAGTAAAATAAGCTACAGTTCTTTTTTGAATGAGAACAATAAGGGAGATATATGTATGGTTCACTAATTATGCACTTAACAGTGCCATTAGATGTTAACAGCATAAATGTATTCGGCCTAATGATCTTGGCAGAGATACAAAAGCTTGTGAGATTGTCAGCAAAAGGAGAAAAAGTGACTACCACGCCATCGCATTATTAAGGGTGGCATTCTTACCCATAATGAATGACTCCGTCCCCCCCAGAGCTGCTGTAATATAGTGTGTTAATGATATTGAATTTTGCTGTTACAAAGATGGGACTTTAATTGTGAGAGTGCTGTCCTGGGAGTTGCATGTTTTCAGTTTGCTAGTGTTCTGTCTGTCCGAGCTGCAGCGTGCTGTGCAAACCATTCACATACTGCAGTGGGggtggtttatttgttttggattttttaatttaattttattaggtttctttattttaaggTTTGAATTTTAtgatttgtccttttttttctgcctttctGGAAAAACACATCAAGTTCAGTTTTAGCCTTAACAGCATCACTTCTTCAAGGCTCGGTTTGCTGAATGGTTCTGGGATTCATCGATTTcagcattatgtaaaataaatagcttttacAAAGCTTTGAAAAAGATTCTGGTGTCTTTTCTTCCTCCTGGGCTCTTGGGGTGTTGGAGAGCTCTTGTCCAGTTGAACTATGAGGATTTACTATTCAGACTAAACTTTTAACAGGGGTTCTGAACCGAGTTTGTC
>TU196074
GGGAACTAGGCTACTATTTATTTCAGTGAACGGTCTGTGTTCATGTCTTGTCTCGACCAGCAAGTAGATGGCGTCTGACTGCGGTTCCCAGTCCACCAGTTAGAAAGCTGAGTCACAGAACTGGCGAGTTGGTAACGGTGGCCGTGAAGGAGCTGGGTATTTCGGGAGAACTTGTATCGATAATTGCCATTGCCCGGGAAGATGTTGACGATCACGCTGAAAACGCTCCAGCAGCAGACCTTTAAGATCGAGATCGACCCGGAGCTGACGGTAAAAGCGTTGAAGGAGAAGATAGAGGCAGAGAAAGGATGCGATGGTTATCCGGCCTCTGGACAGAAGCTCATCTATGCAGGTAAAATCTTAAATGATGACATACCTTTAAAAGACTACAAGATAGACGAGAAGAACTTCGTGGTAGTCATGGTTACAAAGCCAAAACCAACCTCCCCTCCACAGCCCTCCAGTCAACCCGCCCCACCCCCTGCTGTTGTGAGTGTGCCGCCgccggctgctgctgctgctgctgcccc

Function

symbol description
rad23ab Predicted to enable polyubiquitin modification-dependent protein binding activity; proteasome binding activity; and ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol and nucleoplasm. Orthologous to human RAD23A (RAD23 homolog A, nucleotide excision repair protein).

NR:

description
PREDICTED: UV excision repair protein RAD23 homolog B-like

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005997 True 5985 mRNA 0.43 10 14159131 14171565
TU196074 False 530 TUCP 0.52 4 14168090 14171607

Neighbor

gene id symbol gene type direction distance location
AMCG00005999 NA coding downstream 22520 14092900 ~ 14136611 (-)
AMCG00005982 NA coding downstream 226327 13926910 ~ 13932804 (-)
AMCG00005983 NA coding downstream 234269 13917335 ~ 13924862 (-)
AMCG00006004 NA coding downstream 317169 13830917 ~ 13841962 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding downstream 331545 13814192 ~ 13827586 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding upstream 2238 14173845 ~ 14179120 (-)
AMCG00005996 LOC106613681 coding upstream 15641 14187248 ~ 14198914 (-)
AMCG00006012 NA coding upstream 78184 14249791 ~ 14256738 (-)
AMCG00006014 NA coding upstream 92781 14264388 ~ 14272009 (-)
AMCG00006015 cib3,LOC107687907 coding upstream 198802 14370409 ~ 14374943 (-)
G155652 NA non-coding downstream 66674 14089336 ~ 14092457 (-)
G155593 NA non-coding downstream 274503 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 277961 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 371497 13786006 ~ 13787634 (-)
G155521 NA non-coding downstream 481794 13675209 ~ 13677337 (-)
G155701 NA non-coding upstream 128868 14300475 ~ 14305697 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 147372 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 198154 14369761 ~ 14370182 (-)
G155754 NA non-coding upstream 250897 14422504 ~ 14424746 (-)
G155768 NA non-coding upstream 317683 14489290 ~ 14491929 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 460597 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 575780 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1002813 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 1107412 13036424 ~ 13051719 (-)
AMCG00005936 march2 other downstream 1187725 12896554 ~ 12971406 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 165284 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 337626 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 508190 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 610899 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 826893 14998500 ~ 15007979 (-)

Expression


Co-expression Network