AMCG00005998 (crt,calr3,LOC102296215,LOC106573818,LOC100704618)


Basic Information

Item Value
gene id AMCG00005998
gene name crt,calr3,LOC102296215,LOC106573818,LOC100704618
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14173845 ~ 14179120 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005998
ACTTAGGTCGCAatttaaacaggaaacacttctcTGTCTTCTCACTTTTTACCGTTACAGGTTTCAGGACTGCCTGCGGTTTCAAACATGGCCGCCCTCTGTCTCAGCGTGGTGTAATCCGAGCACTTCCGAGGAAGAACTCGTGGTCTCCGCTCATTGGCCAGGGCCCGGGCCAATCAGAGACGGCCATCTGTTCGGAATAGCAGTGAGAAATTCCCAGATTACGCGCAGTATAAACCGGGGCAGATCCGAGGGGCTGGCACACACGGAGCTGACCTGGGCATCGAGAGGGGCAAACATGCGCTCAACCGCGGTACTGTTCTCGCTGTGTGTGGCGGCACTCACCGTCAATGCCACGGTTTATTTCAAAGAGCAGTTCCTCGATGGAGATGCTTGGAAGAGCCGCTGGACTGAATCGAAGCACAAAACCGACTATGGCGAGTGGAAGCTGACCGCCGGGAAATTCTATGGAGACGCAGAGAAGGATAAAGGTGACCAGGATGCCCGCTTCTACGCGCTCTCCTCCCGGTTTGATGCCTTCAGCAACGAGGGGAAACCGTTGGTGATCCAGTTCACCGTGAAGCACGAGCAGAAGATCGACTGCGGCGGCGGCTACGTCAAGGTGTTCCCGGCTGACCTGGAGCAGGCGGAGATGCACGGAGACTCGCAGTACTACATCATGTTCGgGCCCGATATCTGTGGCTACAGCACCAAGAAGGTCCATGTCATCTTCAATTACAAGGGCAAAAATCACCTCATCAAGAAAGAAATCAAGTGCAAGGACGATGAGCTGACGCACCTGTACACTCTGATCCTGCGGCCAGACCAGACGTACGAGGTGAAGATCGACAACGAGAAGGTGGAGTCTGGCACCCTGGAGGAGGACTGGGACTTCCTGCCCGCCAAGATGATCAAGGACCCCGAAGCCAAGAAGCCCGAGGACTGGGACGACCGGGCCAAGATTGATGACCCTGAGGACACCAAGCCTGAGGATTGGGAAAAGCCAGAGAACATCCCCGACCCCGATGCCAAGAAGCCTGAAGATTGGGACGAGGAGATGGATGGAGAGTGGGAGCCCCCAATGATCCCCAACCCTGAGTACAAGGGCGAGTGGAAACCAAAACAGATTGAGAATCCCAACTTCAAGGGAGTCTGGGTTCACCCCGAAATCGACAACCCTGAATACACCCCCGACTCCAACATCTACAAGTTCGACAACATCGGGGTGCTGGGACTTGATCTGTGGCAGGTGAAATCGGGTACCATCTTTGACAACTTCCTGATCGCCGATGATGAAAAGGAAGCCGAGGAGTTTGGAAATGAAAGCTGGGGAGAAACTAAGGAAGCTGAGAAGAAAATGAAGGACAAACTGGACgaggaggagaggaagcagagagaggaggaggagaagaccaaaaaagacaaggaaccagaggaagaggaggacgagGAAGACGATGAGGAAGAAGATGGGAAGGAGGAGGACGAGGTAGAGGGGGATGAAGACGATGGGTCGGATAACGAGACCCCAAGCAAAGACGAACTCTAAACTGTCCGGCAGGCCTCCACTCAGGGGACGGCTGCTGTGCACCTCCACTGGGAATCACACGGGAGTTCAACCCCCACCCTCTGCTGCACTCTTTCCCTCCTTCTCTAATTAGAATTTGTATAATTGACAAACTGCcctagcttttttttttttttttttttttttttttttttaaatttaattttatgatttttattt

Function

symbol description
calr3 Predicted to enable several functions, including calcium ion binding activity; protein folding chaperone; and unfolded protein binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Located in endoplasmic reticulum lumen and nuclear envelope.
crt enoyl-CoA hydratase

NR:

description
PREDICTED: calreticulin-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005998 True 1747 mRNA 0.52 9 14173845 14179120

Neighbor

gene id symbol gene type direction distance location
AMCG00005999 NA coding downstream 37234 14092900 ~ 14136611 (-)
AMCG00005982 NA coding downstream 241041 13926910 ~ 13932804 (-)
AMCG00005983 NA coding downstream 248983 13917335 ~ 13924862 (-)
AMCG00006004 NA coding downstream 331883 13830917 ~ 13841962 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding downstream 346259 13814192 ~ 13827586 (-)
AMCG00005996 LOC106613681 coding upstream 8128 14187248 ~ 14198914 (-)
AMCG00006012 NA coding upstream 70671 14249791 ~ 14256738 (-)
AMCG00006014 NA coding upstream 85268 14264388 ~ 14272009 (-)
AMCG00006015 cib3,LOC107687907 coding upstream 191289 14370409 ~ 14374943 (-)
AMCG00006028 NA coding upstream 204550 14383670 ~ 14391108 (-)
G155655 NA non-coding downstream 7441 14166179 ~ 14166404 (-)
G155652 NA non-coding downstream 81388 14089336 ~ 14092457 (-)
G155593 NA non-coding downstream 289217 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 292675 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 386211 13786006 ~ 13787634 (-)
G155701 NA non-coding upstream 121355 14300475 ~ 14305697 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 139859 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 190641 14369761 ~ 14370182 (-)
G155754 NA non-coding upstream 243384 14422504 ~ 14424746 (-)
G155768 NA non-coding upstream 310170 14489290 ~ 14491929 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 2238 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 475311 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 590494 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1017527 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 1122126 13036424 ~ 13051719 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 157771 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 330113 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 500677 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 603386 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 819380 14998500 ~ 15007979 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016958 calr3b coding NC_007113.7 CM002886.2 55783896 ~ 55797318 (-)