AMCG00005999


Basic Information

Item Value
gene id AMCG00005999
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14092900 ~ 14136611 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005999
CAGCAACAGGGGAAGATGGCGGCGCTCACGGCTCTCACTCAGGTTGATCCAGGCCACACAGGGAGGGTGGGCCCCACGGaagctgctttgtttttaaagaaatccgGTCTCCCTGACACAACCTTGGGAAAGATCTGGGATTTGGCCGACCCAGAAGGAAAAGGCTTCTTGGACAAGCAGgGTTTTTATGTTGCTTTAAGACTGGTCGCATGTGCACAAAGCGGCAATGACGTGAGCCTTGCCAGCTTAAACCTCACCGTCCCACCCCCCAAATTTAAGGATACCAGCAGTCCCTCACTCAGCACAGCATCATCATCAGGGGAGTCCCACTGGGCAGTGAGGcCGGAAGAAAAGGGGAAATTTGATGGGATTTTTGAAAGCTTAGCACCGGTCAACGGTCTTTTATCTGGAGAAAATGTGAAACCAGTTCTAATAAACTCCAAGCTACCTCTCGATGTCTTAGGAAGGGTTTGGGATCTTAGTGACATTGACAAAGATGGACACTTGGACAAGGACGAGTTTGCTGTGGCAATGCACCTGGTCTATCGAGCTCTGGAGAAGGAGCCCGTACCATCTGTGTTGCCCTCCTCCCTCATCCCCCCCTCCAAGAGGAAGAAGTCGGGCAGCGCTCTCCCGGGCTCCATCGCCGTCCTTCCCGGCGTGGTTCCCGTACTCCCCGCCAGCCCACCACCGCCGAAAGACAGTCTGCGCTCCACTCCCTCACACGGCAGCATGAACTCCCTCAACAGCGCCGGCAGCCTGTCGCCCAAACACACGCTCAAGTCCGCCCAGCCAACAGTGAACTGGGTGGTGCCGGTTGCTGACCGAGGAAGGTATGACGACATCTTCCTAAAAACGGACGCAGACTTGGACGGTTTTGTCAGTGGCCACGAAGTCAAAGACATCTTCATGCACTCAGGGCTTCCTCAGAACCTTCTGGCACACATATGGGCCTTGGCTGATACCAGGCAAATGGGGAAGCTGACAAGGGAACAGTTTGGTTTGGCCATGTACCTCATCCAGCAGAAAGTCAGCAAAGGGATTGACCCCCCCCAGGTCTTGACCCCAGACATGATCCCTCCTTCAGAGAGAGCCACGCCCGTTTCCGACAGCACGAGTTCGGTTGGTTCGGGGGAATTTACTGGAATTAAGGAACTGGATGATATAGGCCAGGAAATCGCTCAGCTACAGAGGGAGAAATATGTGCTAGAGCAGGACATCAGGGACAAGGAGGATGCTATCAGACAGAAAACTAATGAGGTTCAGGAGATGCAGAACGATCTGGACCGCGAGAGCTGCAGTCTACAGGAGCTGGAGTCTCAGAAGCAGGACGCCCAGGACCGGCTAGAGGAGATGGACCAGCAGAAGGCCAAGCTGGAAGACATGCTGAACGACGTGAGGCAGAAGTGCCATGAAGAGTCTCAGATGATCTCCTCGTTACAAACGCAGATCCACTCCCAGGAGTCGGACCTGAAGAGCCAGGAGGAGGAGCTGAGCCGGGCCAAGGGGGACCTGAACCGCCTGCAGCAGGAGGAGACGCAGTTAGAGCAGAGCATCCAGGCTGGGAAGGTCCAGCTGGAGACCATCATCAAGTCCCTGAAGTCCACACAGGATGATATCAACCAGGCTCGGAGTAAACTCTCCCAGATCCAGGAGAACCAGCAGGAGGTGACGAAGAGCATCGATCAGTACAACAGTGCACTGAACGGCACGCACGGCGGCAGCATGACCAACCTCGCCGACATGAGCGAGGGATTCCCGGAGAGGGAGAACGGGGGATTCGGCGCCATGGAGGATCCGTTCAAGGCCAAGGCAGATCCCTTTCATTCAGAGGACCCTTTTAAAACAGACCCATTTAAAGATCCTTTCGGCGGAGATCCTTTCAAAGAGAGCGATCCCTTCAAGAACTCATCGTCGGACGATTTCTTCAAGAAAACGCCCAAGGCAGACCCCTTCACCTCCTCCGATATTTTCAGTAAAGGCGCCACGTTGCCCGCGAAGTCTGGTCACTTCGGCAGCAGTGATCCTTTTGTATCTACAAGCCCAAAACCCAAAGGACCAGACCTCTTTGGCACATTGGACCCTTTTGGAAGCGGCTCCTTTGGAAGCAACAGCGGGTTTGCAGACTTCAGCCAAATGTCAAAGAGCCCAACGCCTCACGCGGATCCGTTTAAATCATCTCTCGGGGGGCAGGGGTTCTCGGAGGACCCCTTCAGAGGAAAGCTGGACACCCCTGCACTGCCGCCCAAGAAAAACGTGCCTCCACGACCGAAACCTCCCAGTGGTAAGAGTACTCCAGTAAACCTGCCTGGGTCTGGGGACTCGTCCAAGCTGAGCGATCCTTTCCAGCCGTTTGGCGCTGACGCCAGCGACCCGTTTCAAAGTAAAAAGGGGTTGGGAGACCCGTTTAGCGGCAAAGATCCTTTTGCTCCTTCCTCCTCAAGTAAAGCTTCTAAAGACTCTTCCTTGGGTTTTGCAGACTTCAGCTCTTTTGGAAATGAGGCGCAGCAGTTGGAGTGGGCGAAGCGCGAGAGCGAGCGGGCGGAGAGGGATCGCCTGGAGCGTCTGCGGAGACAGGAGCAAGAGGACCTGGAGCTCGCCATCGCGCTCAGCAAGGCCGAGATGTCCAACGCATGAGCCCCGCTCGGCCGCCGCACTGGAGCCAACGCATCAATGTGTAAAAAACCTCACAAAACAACTCTAATACACACAACTATCAGACTGTCTGTGAATGTCAAGAATTCAACAGAACACTGAGTTGGAAGAGAAAGGAGAATCATGAATGGGTCTGTTTTACGATGTATATCGGGT

Function

GO: NA

KEGG:

id description
K12472 EPS15; epidermal growth factor receptor substrate 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005999 True 2811 mRNA 0.55 22 14092900 14136611

Neighbor

gene id symbol gene type direction distance location
AMCG00005982 NA coding downstream 160096 13926910 ~ 13932804 (-)
AMCG00005983 NA coding downstream 168038 13917335 ~ 13924862 (-)
AMCG00006004 NA coding downstream 250938 13830917 ~ 13841962 (-)
AMCG00006005 nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661 coding downstream 265314 13814192 ~ 13827586 (-)
AMCG00006003 sugp1,LOC107729615,LOC107563402 coding downstream 292070 13793362 ~ 13800830 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding upstream 37234 14173845 ~ 14179120 (-)
AMCG00005996 LOC106613681 coding upstream 50637 14187248 ~ 14198914 (-)
AMCG00006012 NA coding upstream 113180 14249791 ~ 14256738 (-)
AMCG00006014 NA coding upstream 127777 14264388 ~ 14272009 (-)
AMCG00006015 cib3,LOC107687907 coding upstream 233798 14370409 ~ 14374943 (-)
G155652 NA non-coding downstream 443 14089336 ~ 14092457 (-)
G155593 NA non-coding downstream 208272 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 211730 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 305266 13786006 ~ 13787634 (-)
G155521 NA non-coding downstream 415563 13675209 ~ 13677337 (-)
G155655 NA non-coding upstream 29568 14166179 ~ 14166404 (-)
G155701 NA non-coding upstream 163864 14300475 ~ 14305697 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 182368 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 233150 14369761 ~ 14370182 (-)
G155754 NA non-coding upstream 285893 14422504 ~ 14424746 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 394366 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 509549 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 936582 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 1041181 13036424 ~ 13051719 (-)
AMCG00005939 LOC100697221 other downstream 1142933 12920123 ~ 12949967 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 22520 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 200280 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 372622 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 543186 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 645895 14782506 ~ 14784280 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location