AMCG00006005 (nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661)


Basic Information

Item Value
gene id AMCG00006005
gene name nmrk2,LOC106511986,LOC103138501,LOC101469484,LOC103464095,LOC102302661
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 13814192 ~ 13827586 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006005
TGGCAGAGTAGGGCTCTggtggacaaaaaaaaaaaaagaagaggaaaacacCGCAGGAtttgtaattgatttgtttttgttgttgttattattattaaaaaggaagttgtattcatttttttccccactttctTGTTGCAAAGCCCAAGATCAAGACCTCAACATGAAGTACATTTTAGGCATTGGCGGCATGACCAATGGTGGGAAAACCACATTGACGAATAGACTTATCAAAGCGTTTCCCAACTGTTGTGTGGTGCATCAAGATGACTTCTTCAAGCCACCAGACCAAATAGAAGTCGGGGAGGACGGCTTTAAACAGTGGGATGTGATCACTGCTCTGGACATGGAGGCGATGACCAACACGGTGAAGGCGTGGATGGAGAACCCAGTGAAATTTGCCCGTTCTCACGGTGTCAGCGTGTCCCCTGTGGAGGATGAGGCCCAGTCTGAGGAGGAGATCCACATCCTGATCGTGGAGGGCTTTCTGCTCTACAACTACAGGCCGTTACTTGACGTCTATGACAAGTGCTACTACATTGCCGTTCCGTACGAGGAGTgcaagaagaggaggagtacaaGGAAATACACGGTTCCTGACCCCCCCGGCCTGTTCGATGGCCACGTGTGGCCCATGTACTTGAAGCACAGGAAAGAGATGGAAGCCAACTGTATGAATATTGAATATCTTGACGGTTTGAAATCTAAAGATGAACTCTACGAGCAGTTAAGACACACTGGGAATGTTTACTATGTATCCATATAG

Function

symbol description
nmrk2 Predicted to enable ribosylnicotinamide kinase activity. Predicted to be active in cytoplasm. Orthologous to human NMRK2 (nicotinamide riboside kinase 2).

NR:

description
PREDICTED: nicotinamide riboside kinase 2-like

GO:

id name namespace
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0050262 ribosylnicotinamide kinase activity molecular_function

KEGG:

id description
K10524 NRK1_2; nicotinamide/nicotinate riboside kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006005 True 766 mRNA 0.46 8 13814192 13827586

Neighbor

gene id symbol gene type direction distance location
AMCG00006003 sugp1,LOC107729615,LOC107563402 coding downstream 13362 13793362 ~ 13800830 (-)
AMCG00005972 stk11 coding downstream 28307 13772482 ~ 13785885 (-)
AMCG00005969 NA coding downstream 52762 13751988 ~ 13761430 (-)
AMCG00005970 atp5d,LOC107554819,LOC106613744,LOC107719603 coding downstream 95764 13714984 ~ 13718428 (-)
AMCG00005978 LOC106573600,LOC105011525,LOC106613740 coding downstream 246711 13561072 ~ 13567481 (-)
AMCG00006004 NA coding upstream 3331 13830917 ~ 13841962 (-)
AMCG00005983 NA coding upstream 89749 13917335 ~ 13924862 (-)
AMCG00005982 NA coding upstream 99324 13926910 ~ 13932804 (-)
AMCG00005999 NA coding upstream 265314 14092900 ~ 14136611 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding upstream 346259 14173845 ~ 14179120 (-)
G155550 NA non-coding downstream 26558 13786006 ~ 13787634 (-)
G155521 NA non-coding downstream 136855 13675209 ~ 13677337 (-)
G155503 NA non-coding downstream 330173 13466970 ~ 13484019 (-)
G155502 NA non-coding downstream 348604 13464455 ~ 13465588 (-)
G155431 NA non-coding downstream 539499 13273640 ~ 13274693 (-)
G155591 NA non-coding upstream 49137 13876723 ~ 13881170 (-)
G155593 NA non-coding upstream 56005 13883591 ~ 13884628 (-)
G155652 NA non-coding upstream 261750 14089336 ~ 14092457 (-)
G155655 NA non-coding upstream 338593 14166179 ~ 14166404 (-)
G155701 NA non-coding upstream 472889 14300475 ~ 14305697 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 115658 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 230841 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 657874 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 762473 13036424 ~ 13051719 (-)
AMCG00005939 LOC100697221 other downstream 864225 12920123 ~ 12949967 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other upstream 331545 14159131 ~ 14171607 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 509305 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 681647 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 852211 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 954920 14782506 ~ 14784280 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location