AMCG00006012


Basic Information

Item Value
gene id AMCG00006012
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14249791 ~ 14256738 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006012
AAAGCTTCAGCACAGTGTGGGTTAACCACATGTTCTGTTCTGCTAAACAAGGATAACTATTGAGTCCTTTATATCCCCCTGGGGTGCCAGACTGTGTGTATGATACTGTCAAATGCAAACTGTCATGTGCTTGTACAGTATACAGGCGTGCAATCCCCGCCCGTTGGAAACAGCCAATGGGGCACCTGCTCTGCTAGGTTTTGAAGGAGTGAGAGGGGGTGCTATTTAAGAAGTGAACTGCATGAGTTTTCTCAGAGATCTACAGGGTTTATTCACAGCAAGGAGGGTAAAGGAAATAGTAAACACTGTGAACACTGAGGATTATATCCGTTTCCTTTATTTCATATCCTTGTGTGCCAAACAACACGCAGCAGCTGCTGAAGCTCTCCAAACTTTGCATATCCAGAAGAAGACATGAAAAAGCAGGACTGTCGgtatctgctgctgctgctcttgaGTTTTGTTGTATGTCCTGCCCACACCTCTGGTAACTTTGTAGACAATTCTTTGGAGCCACCAGAGAATGCATTTGGCAAGAGTGAACATAACTTGGCCAAGTTTTCCCTGCGCAAACCCTCCGACCCCGAGGAAGATGCCTGCTACATCAGCCCTGGCAATGCGGAGACGCTCAGCGATTGTGAATTCAACCACACGGCCAAAACCTTCCTGATCATACACGGATGGACGGTGAGCGGGATGTTTGAAAGCTGGGTCGCCAAACTGGTGTCTGCGCTGTACGAGAGAGAGCACCACGCCAACGTGATCGTGGTGGACTGGCTGAGCACAGCGCACAACCATTACCCCATTGCAGCCCAGAATACCAAGCTAGTGGGACAGGACATCGCCCGGTTCATAGACTGGATGGAGGAGAAAGTGAATTTCCCTCTTGACAACATGCATCTCATTGGCTACAGCCTGGGCGCCCATGTGGCAGGATTTGCAGGAAGCCACGCCTCCAATAAAGTTGGAAGAATAACTGGTCTGGACCCGGCCGGCCCGGTCTTCGAGGGGGCACATGCTCACGGTCGTCTGTCCCCGGATGATGCGCACTTCGTGGATGTCCTACACACCTTCACCCGTGGTTCCCTGGGCCTGAGCATCGGTATCCAGCAGCCTGTGGGCCATATCGATATCTACCCCAACGGAGGCAACTTCCAGCCGGGCTGCAACTTGCGCGGAGCCCTGGAGAAAATTGCCAGTCACGGGATATTCGCAGTGTCCGAGGCAGTCAAGTGCCAGCACGAAAGGTCCATTCACCTTTTCATCGACTCGCTGCTGAACGAGCAGGAGGCCAGCACAGCCTACCGCTGTAGCAGCAAGGAGATGTTCGACCGCGGCTCCTGTCTCAGCTGCCGCAAGAACCGCTGCAACACGGTGGGCTACGACGTCAGCCAGGTCCGTCACAAGCGCAGTGCCCGGATGTACACCCGCACGCGCGCCTCCATGCCCTTCAGAGTCTACCACTACCAGGTGAAGATTCACTTTGCAAGCAAGACGCACCGCTTGCACATAGAGCCCTCCCTGACAGCTTCTCTTTACGGCACCAAAGGAGATGTTGAGAACCTTCACCTGAACATAAAGCAGAAGATCTCACCCAACAAAACGCACTCCTTCCTGCTGGTGACAGAGGTGGACATCGGGGATCTGCTGATGATGAAGTTCAAGTGGGAGGCCACCAGCAACTGGTCTTCCACCTCCCTGTTGAAGATGGTTTCCTCCTGGTGGTCGGGCCCATCGGCAGACAGCTCGGACGTGGAGGTGCACAAGATCCGGGTCAAAACTGGGGAGACCCAGAAAAAGCTGGTTTTCTGCAGTAAAGACACGCAAGCATTGGGGCCGGCTCAAGAAGTGACATTTGTGAAGTGTAAGGAGGAATGGAATACAGGATCCAAAAGGAATGCCACAAAGCAACCCTGAAACCATATGTAAAGAAATACCGAATCGTCGGGACCAAATCATCTTTTTTCCCCTGAAAGAAGCACTTAGCAATACACCCTAGACAGCcttaaatatgtttgtttacGTTTCTCGAGAAAGaacaaactgtatttattttgtatgtatatattatacagagAGACTTGTAACTATTCTTGTATGTAAATaacatgttgtattttttaagtgcATTACTCATAAGTGGCATATGGAACTTTTTGTATTCACGGAAATCCAAAGATTTTGATGATGTAATTTAGTGTAGTTCTGCAGCAACAGAAGAGGCAGTTTCTAAATGCACTACTTGAATCATAAGTCTCTGTTCATGAAAGCtgcttgaaaacattttaagctCATCTGGATTATCCACTCCAAAGTTATGCACTCAAAAACACCATTGGGACCACTGGTTGTAAAATAGACGTCACAAAACGAGCACGAGAACAATCAGATTAGTCATCCAATGAGCTCAAAAATTAGCTTTCATTAAGCATGTCCAAGTTCAATTTGGTGTGTAGCACGCATAACGAACTGTAGCATTTTGCATCAAGAGTTTTATACTGCTTTTGAACGTCAAGGTGGGTttatagaaaaactaaaactaaaattcaTGAACAGAGCTGAACAGAAAAACACTTCAGTGGCCACAAAACATTGCTCACATGTTTCAAACAGCATTTGCAAACTCCTGCCTCACCTGCTGTTACAGGGATCTTACAGAACGTCCCTTAAAATACTTCACTGTTGTCATGTGTCTGTCTTAATAGATTATCAGTTCTTTAGCTgtcaaatgctgcttttatcAAGGAATTGTTACGGGAGTAGTACGTATTAGAAACTCCAATTCCTGGTAGTGGTTTAACTGAAACTGGGGGCTACTGAAAACTTGTAACCTGCCTGTACAAGAATGCAGAAACCCGAAGACTGACTCTCCTGCCTCACCTAATCAAAGCGTACCGTAATACTCCAGGTATATTGTCTGTTTGGTGCTTGAATGTTTGGGGGTATGAAATTAGAACCCAGTTCAAATCATTGGCATTTCCTCATTAGTTAGTCATCCTTGTAAACAATTTGTAGCGTTGTTCAGGAATTTCAAACAAGACAGATACTCATTAGACAAAGAatgaacatatatattatgtataatatatatttattgaaaaaaaacctGTGGGAAATGAACGTGGTTAGAATTGTGGCCTCACGAATTAATCAGAAAGCAGGATGGCACTAAGCTATTGTTATGGCGTCTTTAAGTACTAACAGAGTTCATCTCCAGATATGTATTAGCATTGGGCAGAAGAAATTGTGAACTTTTGCATAGGTGCAATACAGTTAATTATTAAACTGTTATTGGGAGGACAGTACAGAGGAAGAATGGAGTGGAACGCAAAAGGTTAATATTTGAAAAGCCTTATCTTGGGCAGCAATTATTGTAAGCAGAATACAAAGCCTTAAGAATCAATTTGCACATGAAGAATCTGTAATACTTGAGTGGGAgaatctgtactgtattttattttcattttttttaaactatattagTTCAACTTTTGTATTGAACCAGTGGGAtggacgggggggggggggggggg

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004465 lipoprotein lipase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006012 True 3533 mRNA 0.46 10 14249791 14256738

Neighbor

gene id symbol gene type direction distance location
AMCG00005996 LOC106613681 coding downstream 50877 14187248 ~ 14198914 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding downstream 70671 14173845 ~ 14179120 (-)
AMCG00005999 NA coding downstream 113180 14092900 ~ 14136611 (-)
AMCG00005982 NA coding downstream 316987 13926910 ~ 13932804 (-)
AMCG00005983 NA coding downstream 324929 13917335 ~ 13924862 (-)
AMCG00006014 NA coding upstream 7650 14264388 ~ 14272009 (-)
AMCG00006015 cib3,LOC107687907 coding upstream 113671 14370409 ~ 14374943 (-)
AMCG00006028 NA coding upstream 126932 14383670 ~ 14391108 (-)
AMCG00006029 NA coding upstream 136716 14393454 ~ 14401173 (-)
AMCG00006027 NA coding upstream 185172 14441910 ~ 14445493 (-)
G155655 NA non-coding downstream 83387 14166179 ~ 14166404 (-)
G155652 NA non-coding downstream 157334 14089336 ~ 14092457 (-)
G155593 NA non-coding downstream 365163 13883591 ~ 13884628 (-)
G155591 NA non-coding downstream 368621 13876723 ~ 13881170 (-)
G155550 NA non-coding downstream 462157 13786006 ~ 13787634 (-)
G155701 NA non-coding upstream 43737 14300475 ~ 14305697 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding upstream 62241 14318979 ~ 14323114 (-)
G155717 NA non-coding upstream 113023 14369761 ~ 14370182 (-)
G155754 NA non-coding upstream 165766 14422504 ~ 14424746 (-)
G155768 NA non-coding upstream 232552 14489290 ~ 14491929 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 78184 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 551257 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 666440 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1093473 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 1198072 13036424 ~ 13051719 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other upstream 80153 14336891 ~ 14341603 (-)
G155770 LOC103376870 other upstream 252495 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 423059 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 525768 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 741762 14998500 ~ 15007979 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020303 lpl coding NC_007133.7 CM002906.2 15624371 ~ 15630421 (+)