AMCG00006013 (LOC105011475,LOC106613699,LOC106573549)


Basic Information

Item Value
gene id AMCG00006013
gene name LOC105011475,LOC106613699,LOC106573549
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14336891 ~ 14341603 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006013
ATGTGCGGCGAGCGGAGCCGCAGTGAGGAGGCCGTGCTCCAGCCCGGCCCCCAGTGTGACCCGCCGCGCATTGACACGCCAGGGGTGTTAGTGTTACTGCACTTTGACAGAGCCTCCACACACCGCAGGACACTGATCAACAGCAAATACAACATGCCGCTCGCGATGGACCTGATGCACCCCTCCTATGAGGCGGAGAGGAGGAGGCACAAGAAGAAGAGGCTGGCTGCTACAGGATCACAACTGTCTTCAGCCACGCGCACAGAGTGGTCCCGTGTGCCGGCTGCTCCTACGTCCTGTGCCAACCCAAAGGAGGGAAGTGCCGCCTCACTGAAGGctgctctttcagaagaaaacaacactgaGCCATTCTAATCCCACACTTCTACCGGAAGATCTGTCCATTTCTCTGCCTGCGTCTCTACTTGGGGCAGTCGCCACTGGCCAGGCTTGATCGACACAAAGGCGATGattcagaaaagaaaagggtgaaaaaatgaataaaaaggaaATCAGTGAGTTGGGGAGGTGGTTCTGAATGAAGACTGATTTTACTGCGAATTGTATGGATCTGTGATTGCACTATGCACAAGAACGCACTCCGTAAAATTCTTCTCTCTACAACTTGAAATGCTCCCAAGGCATTTTTGAGTAGTGTCATGGGATTGTTAATGGGGAACATATCTTGCATTTGCACTTTCTGTATCTAAACATCTTAATAAACTTAATAAAGGCTCAGTTTTAAACTCAA
>TU196147
CACGTGTGTGTGCAGTTGACACGCCAGGGGTGTTAGTGTTACTGCACTTTGACAGAGCCTCCACACACCGCAGGACACTGATCAACAGCAAATACAACATGCCGCTCGCGATGGACCTGATGCACCCCTCCTATGAGGCGGAGAGGAGGAGGCACAAGAAGAAGAGGCTGGTACAGAGTCCCAACTCTTACTTCATGGACGTGAAGTGTCCAGGCTGCTACAGGATCACAACTGTCTTCAGCCACGCGCACAGAGTGGTCCCGTGTGCCGGCTGCTCCTACGTCCTGTGCCAACCCAAAGGAGGGAAGTGCCGCCTCACTGAAGGctgctctttcagaagaaaacaacactgaGCCATTCTAATCCCACACTTCTACCGGAAGATCTGTCCATTTCTCTGCCTGCGTCTCTACTTGGGGCAGTCGCCACTGGCCAGGCTTGATCGACACAAAGGCGATGattcagaaaagaaaagggtgaaaaaatgaataaaaaggaaATCAGTGAGTTGGGGAGGTGGTTCTGAATGAAGACTGATTTTACTGCGAATTGTATGGATCTGTGATTGCACTATGCACAAGAACGCACTCCGTAAAATTCTTCTCTCTACAACTTGAAATGCTCCCAAGGCATTTTTGAGTAGTGTCATGGGATTGTTAATGGGGAACATATCTTGCATTTGCACTTTCTGTATCTAAACATCTTAATAAACTTAATAAAGGCTCAGTTTTAAACTCAACTGAatcagtgtgtctgttttaGGATGAAGTATTAAATGTTGTATAATGT

Function

NR:

description
PREDICTED: 40S ribosomal protein S27-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006013 False 751 mRNA 0.50 5 14336941 14341603
TU196147 True 789 TUCP 0.47 4 14336891 14340663

Neighbor

gene id symbol gene type direction distance location
AMCG00006014 NA coding downstream 64882 14264388 ~ 14272009 (-)
AMCG00006012 NA coding downstream 80153 14249791 ~ 14256738 (-)
AMCG00005996 LOC106613681 coding downstream 137977 14187248 ~ 14198914 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding downstream 157771 14173845 ~ 14179120 (-)
AMCG00005999 NA coding downstream 200280 14092900 ~ 14136611 (-)
AMCG00006015 cib3,LOC107687907 coding upstream 28806 14370409 ~ 14374943 (-)
AMCG00006028 NA coding upstream 42067 14383670 ~ 14391108 (-)
AMCG00006029 NA coding upstream 51851 14393454 ~ 14401173 (-)
AMCG00006027 NA coding upstream 100307 14441910 ~ 14445493 (-)
AMCG00006026 NA coding upstream 111415 14453018 ~ 14458341 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 13777 14318979 ~ 14323114 (-)
G155701 NA non-coding downstream 31194 14300475 ~ 14305697 (-)
G155655 NA non-coding downstream 170487 14166179 ~ 14166404 (-)
G155652 NA non-coding downstream 244434 14089336 ~ 14092457 (-)
G155593 NA non-coding downstream 452263 13883591 ~ 13884628 (-)
G155717 NA non-coding upstream 28158 14369761 ~ 14370182 (-)
G155754 NA non-coding upstream 80901 14422504 ~ 14424746 (-)
G155768 NA non-coding upstream 147687 14489290 ~ 14491929 (-)
G155783 NA non-coding upstream 227959 14569562 ~ 14569836 (-)
G155899 NA non-coding upstream 638781 14980384 ~ 14981621 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 165284 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 638357 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 753540 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1180573 13123557 ~ 13156318 (-)
AMCG00005966 sbno2,LOC106573581 other downstream 1285172 13036424 ~ 13051719 (-)
G155770 LOC103376870 other upstream 167630 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 338194 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 440903 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 656897 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 1091829 15433432 ~ 15491642 (-)

Expression


Co-expression Network