AMCG00006018 (slc1a6,LOC108437295,LOC105011479,LOC108230844,LOC107747749,LOC106613701,LOC107757933)


Basic Information

Item Value
gene id AMCG00006018
gene name slc1a6,LOC108437295,LOC105011479,LOC108230844,LOC107747749,LOC106613701,LOC107757933
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14492005 ~ 14507388 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006018
CCAGGCAGAGACGCAGCAGGTGTCTGCCTTCCCCACCCGCCCGAGCTGCTGAAGATGCCTTAACCTCTCCTTCCCACTCACAATCACCACAATCCAGCATTTTCCAACGGGAGGAAAGCTcttacactacacacactaggGCCACACAAGGGGAACTGTCTGTGGTTTCTTgactgccaaaaaaaaagacaaagaaaacaaaaaatacagagaaaagatAAGTCGGTTCCGTTTTGTACCCGGGTTTGTGTTTTCCACCCAGCTTCTCTGGCTGTCTTCTCCTGTAGTAACACCAGGACTTCTTACCTTGTGAAAGACTGCGTGGGAAACTTCCATAAGAGAGAAGTTTCTCACGAGACCTATTTGCTAGACCAGGTGCTGGAGCTGATTATGAATGAGAGGCCTACCAACGCCAACAGCTTGTTTCTGAACGAAGACTCCGACAAGCACTTGCACCCTGACCGTGGCTTCCAGAGGCTGCGCAAGGCCATGCAGAAGAAGGCATCTCGAGCTCAGGAGAAAATGACCTCCATCACCAGGGATAGCATCAAGAACTTCCTGCGGAGGAACGCCTTTGTGCTGTTCACCGTGGCCGCTGTAATAGTAGGAATCATGATGGGCTTTGGTTTGCGACCTTATGACATGTCTCTAAGGCAGATCAAGTACTTTTCGTTCCCTGGTGAACTGCTCATGAGGATGTTACAAATGCTGGTCCTGCCACTTATTGTGTCAAGTCTTGTGACGGGCCTCTCCTCTCTGGACAGCAAAGCCTCAGGGAAGATGGGTATACGAGCCGTAGTGTACTACATGGTCACCACAGTGATCGCCGTGTTCATTGGCATCGTCATGGTGATGATCATCCGGCCTGGCAAAGGACACAGGGACAGTCCGACGCCCACCAGCAGCAGCATAGAGCAGGTCCAGGCCACGGATGCATTCTTGGATCTCATCAGGAACATGTTCCCTCCCAACCTGGTAGAAGCATGTTTCAAACAGTACAAAACCCTCTACACCAAGAGGGTGTACAAGAGGAACATCACGGCGGCAGTGAACCTCACCGACATTGCCAACGTCACAGAGTCCCCCATCTTGATCAACATCAGTGGGCTTCTCCAAGGGATGCAAGAGACCATCACTGTGGAGGAGATCATCCCTATCTCTGGCTCCTCCAATGGAGTCAACGCGCTGGGCCTGGTGGTCTTCTCCATGTGCTTTGGGCTGGTGATCGGGAGCATGAAGCAGCAGGGGCAGGCGCTGCGCGAGTTCTTCGACTGCCTCAATGAAGCCATCATGCGCCTGGTGGCCATCATCATCTGGTACGCTCCTGTCGGCATCCTGTTCCTCATCGCTGGGAAGATCCTGGAGATGAAGGACTTGGCTCAGGTTGGGGGCCAGCTGGGAATGTACACTGTCACGGTCATCGTGGGCTTGCTGGTCCACGGCCTCTTCGTTCTCCCGCTGCTCTACTTTGTCGTCACGCGCAAAAACCCCTTCACCTTCATTACCGGGCTACTGCAGGCCCTCATCACTGCCCTGGGGACCTCTTCCAGCTCCGCCACCCTCCCAATCACTTTCCGCTGCCTGGAGGAGAACAATGGCGTGGACAAGAGGGTGACCCGGTTTGTCCTCCCAGTGGGCGCCACCATCAACATGGATGGCACGGCCCTGTACGAGGCTGTGGCTGCCATCTTCATTGCCCAGGTCAACCACATGGACCTCAATTTCGGCCAGATCCTCACCATCAGTATCACAGCCACCGCAGCCAGCATTGGAGCAGCTGGAATCCCTCAAGCTGGTCTGGTAACCATGGTGATTGTATTGACATCCGTGGGACTGCCTACTGAGGACATAACGCTGATCATTGCAGTGGATTGGTTCTTGGATCGCCTACGGACCACAACCAACGTGCTGGGAGACTCGCTGGGCACGGGCATCATCGAACACCTCTCCCGGCATGAGCTGCAGACACAGGACGCTGAGATCGGGAACTCCGTCATCGAGGAGAACGAGAAGCCGTACCAGCTCATCTGCCAGGAGAACGACGCACAGAAGCACCGCAACAGCGAGACCATCATGTGAGCGCCCACCGACCAATCAACTGCCTGGTCAGCCGACCAGCTGACCGGATCTGACCACTCTTTCAATAAAAAGGCACGGGGGACCATTAATGGGAAGAGGATGGTGTCAATACAGATTCACAGAAGGAAGACAGATGATGGTATTCCCCCAAAACACCACTTTCCCTTCCCGTCTTTGTGGCTCACTTCCCAAAAATCATCTCCCTCTTCCATTACGCTATTCTTGTTGTCCAcggcaaaaacattttttaaatttgtgtttttttattcccacgttttattcatgaaaaaaTTGAACTCTTGATGTTCCAAGAACAAAATGGTATGATAAATTGTAAATCTGGTTTGTAGCAGATGGCTTTAAGTATGCATTGCTGCTTTTCATTCAGAAAATAGGTGTGAGGTGGCTATGATAATCCACTGatgaacattgttttttttaatgaccaaATGACACAAATAACAGTatagaaaacaacaatgcaAGTGCTGCAAATATTCTTGTTTGAAAATAGTCCTGTATCTTATGCTCATGTGCTCACCCCCATCTCAGTCTACATAAAGCATTCTGTAAAGACTCACATGATTAGTAAAGTAGTGATGCAGGGTTGagttattacaattatttaaattctgaTTTTCTTTCCAGGGACATACTCATGTTTTTTTGCATGAAGTATTTTACCCAGTCTGCTGCTGCTCACAgctctttacattttcagtccTG

Function

symbol description
slc1a6 Predicted to enable symporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; cerebellum; optic tectum; and telencephalon. Orthologous to human SLC1A6 (solute carrier family 1 member 6).

NR:

description
PREDICTED: excitatory amino acid transporter 1-like isoform X1

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K05614 SLC1A3, EAAT1; solute carrier family 1 (glial high affinity glutamate transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006018 True 2805 mRNA 0.50 9 14492005 14507388

Neighbor

gene id symbol gene type direction distance location
AMCG00006026 NA coding downstream 33664 14453018 ~ 14458341 (-)
AMCG00006027 NA coding downstream 46512 14441910 ~ 14445493 (-)
AMCG00006029 NA coding downstream 90832 14393454 ~ 14401173 (-)
AMCG00006028 NA coding downstream 100897 14383670 ~ 14391108 (-)
AMCG00006015 cib3,LOC107687907 coding downstream 117062 14370409 ~ 14374943 (-)
AMCG00006020 NA coding upstream 38792 14546180 ~ 14546493 (-)
AMCG00006019 NA coding upstream 39556 14546944 ~ 14549687 (-)
AMCG00006035 NA coding upstream 81983 14589371 ~ 14593370 (-)
AMCG00006039 nduab,ndufa11,LOC106613708 coding upstream 140201 14647589 ~ 14651753 (-)
AMCG00006036 NA coding upstream 153197 14660585 ~ 14662509 (-)
G155768 NA non-coding downstream 76 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 67259 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 121823 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 168891 14318979 ~ 14323114 (-)
G155701 NA non-coding downstream 186308 14300475 ~ 14305697 (-)
G155783 NA non-coding upstream 62174 14569562 ~ 14569836 (-)
G155899 NA non-coding upstream 472996 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 592921 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 671663 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 697481 15204869 ~ 15212286 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 150402 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 320398 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 793471 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 908654 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1335687 13123557 ~ 13156318 (-)
G155770 LOC103376870 other upstream 1845 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 172409 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 275118 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 491112 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 926044 15433432 ~ 15491642 (-)

Expression


Co-expression Network