AMCG00006019


Basic Information

Item Value
gene id AMCG00006019
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14546944 ~ 14549687 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006019
GTAGGAATGGCAGGCACAGTTCGACATGACACAGAGATGATCCAGAAAGCCAAGCAGCAGCTGACCACGTGCACAGACCCCATCGAGAAGCTCCGGCTGCAGTGTCTGACCAGGGGCTCTGCTGGGATCAAGAGCTTGGCCAGGCAAGTCAAGCTGACTTTCCGCATCATGGATGATGACAACAGCGGGACACTGGACGTGAAGGAGTTTCTGAAAGGGCTGGGGGACTACGGGGTGGTGGTGGACAAGAACGAGGCCTTACAGATCTTCAGACTTCTGGATAAGGACGGCGGGGGCACCATCGACTTTGACGAGTTTCTACAGGCGCTgaggCCTCCTATGTCCAACGTAAGGAAGCAGGTGATTACCGACGCATTTCGGAAACTGGACAAAACCGGAGACGGGGTTGTGACCATAGAAGACCTCCAGAACGTGTACAATGCCAAACACCATCCCAAGTACAAGAATGGGGAGTGGACCGAAGAGCAAGTATTCCGATCGTTCCTCGACAGATTTGATTCCCCATATGAAAAAGACGGCAAGGTCACCATGGAGGAGTTTGTGAATTACTACAGCGGAGTGAGCGCCTCCATCGACAGTGACAGCTACTTTGTAGAGATGATGAAAAATGCCTGGAAGCTGTAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006019 True 645 mRNA 0.53 4 14546944 14549687

Neighbor

gene id symbol gene type direction distance location
AMCG00006020 NA coding downstream 451 14546180 ~ 14546493 (-)
AMCG00006018 slc1a6,LOC108437295,LOC105011479,LOC108230844,LOC107747749,LOC106613701,LOC107757933 coding downstream 39556 14492005 ~ 14507388 (-)
AMCG00006026 NA coding downstream 88603 14453018 ~ 14458341 (-)
AMCG00006027 NA coding downstream 101451 14441910 ~ 14445493 (-)
AMCG00006029 NA coding downstream 145771 14393454 ~ 14401173 (-)
AMCG00006035 NA coding upstream 39684 14589371 ~ 14593370 (-)
AMCG00006039 nduab,ndufa11,LOC106613708 coding upstream 97902 14647589 ~ 14651753 (-)
AMCG00006036 NA coding upstream 110898 14660585 ~ 14662509 (-)
AMCG00006038 NA coding upstream 113871 14663558 ~ 14670355 (-)
AMCG00006057 NA coding upstream 155864 14705551 ~ 14718570 (-)
G155768 NA non-coding downstream 55015 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 122198 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 176762 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 223830 14318979 ~ 14323114 (-)
G155701 NA non-coding downstream 241247 14300475 ~ 14305697 (-)
G155783 NA non-coding upstream 19875 14569562 ~ 14569836 (-)
G155899 NA non-coding upstream 430697 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 550622 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 629364 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 655182 15204869 ~ 15212286 (-)
G155770 LOC103376870 other downstream 37330 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 205341 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 375337 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 848410 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 963593 13568467 ~ 13583351 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 130110 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 232819 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 448813 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 883745 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1404389 15954076 ~ 15957090 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016940 capsla coding NC_007113.7 CM002886.2 53890006 ~ 53896300 (-)