AMCG00006027


Basic Information

Item Value
gene id AMCG00006027
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14441910 ~ 14445493 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006027
ATGACCAGGAGGAAGAGTGTGAGGACTGGCAAGGGAAAGGTTCTCTGGGCTAAAGCTCGCGAGGGGATGCATCCACGGTACAGAGACGTCTCTCCACGGATCAGGCGTGTGGAGGATCGCCGGGCGAAGGAGAGGAAGGACGAGAGGGACACCATTAAAGAGGCACTGTGCCTGAAGCCAATCCTGCtaccccagcagcagcagaaagaCCAGCCAGAGGAACGTCCGGTGTTGCACACAGCCTTCGAGAAGGTCGTCTATGACATGACCCACAATGAACGTGTGATCAATGAGATGACCCTCGGGCGACGGATTGGCTTTTACGAGCTGCGAGGGGAGATTGGCACTGGTAACTTCTCCCATGTCAAACTGGGAATCCATGCGCTGACCAAAGAAAGGGTTGCTATCAAAATCCTGGACAAAACCCGCCTGGATAAGAAATCGCAGAGTCTGTTTGCATCCGAGATCTCCTGCATGGAGAGACTGTCGCACCCGAACATTGTCCGTCTGTATGAGGTGCTGGAGACACTGAAGAGGCTGCACCTGGTGATGGAGTACGCCAGCGGAGGGGAGCTCTTCTCCCGGATCACCACCAAGGGGCGACTGTCAGACCTGGAGAGCAGGCTCATCTTTGCTCAGGTCATCTCGGCAGTCAAGCACATGCACGACAACAATATTGTACACAGGGATCTGAAAGCTGAGAATATTTTCTACACGACCAGCTACTGCATCAAGATCGGCGATTTCGGCTTCAGCACAGTCTGCAGCCCCACCGAAGTCCTTTACACATGTTGCGGCTCTCCGCCGTACGCCGCCCCCGAGCTCCTTAAGGAGAAGGGCTATGTCGGGCGCTATGTGGACATCTGGGCCCTGGGAGTCCTGCTGTACTTCATGGTCACAGCCACCATGCCCTTCAATGCTGACAACCTGGGCCGGCTCAAGCGATGCATCCTGCAGGGCTCGTACGCCATCCCAGCCTACGTCTCGGAGGCCTGCCAGCAGGTTATCAAGGGCATGCTGAGAGCTGTCCCTGCCGACCGGACTTCCCTTTCCCAGATCATGAGTTGCACCTGGTTGAATGGCGTTGAATTCCCCCAGCCTTACCCCTCTTTCCACCTCACCCCCACCTACCTGACCCAGCCCCTACCCCTTGggcaggaggagcaggaggtGAAGAGTGCCCTGACGTACCTGGGGATCACAGAGGCCCACCTCCAGAACAACAATTGTGGAGACTCCCGCAGCCCCATCACGGGAGCGTACCGCATCCTTCTGCACCGCATCCTGAAGCGCAGGTCCGTGGAGGCCGTGGGCTACTTCGCCATGTGTCCCAACGAGTGCGTGTCCGGGAGGCGTTGTAGGCGCAACACGGCCATAGAGAAGCACAACCCATCGGCCGTGTGCCTCCTCCTTTAG

Function

GO: NA

KEGG:

id description
K16310 NIM1; serine/threonine-protein kinase NIM1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006027 True 1416 mRNA 0.58 4 14441910 14445493

Neighbor

gene id symbol gene type direction distance location
AMCG00006029 NA coding downstream 40737 14393454 ~ 14401173 (-)
AMCG00006028 NA coding downstream 50802 14383670 ~ 14391108 (-)
AMCG00006015 cib3,LOC107687907 coding downstream 66967 14370409 ~ 14374943 (-)
AMCG00006014 NA coding downstream 169901 14264388 ~ 14272009 (-)
AMCG00006012 NA coding downstream 185172 14249791 ~ 14256738 (-)
AMCG00006026 NA coding upstream 7525 14453018 ~ 14458341 (-)
AMCG00006018 slc1a6,LOC108437295,LOC105011479,LOC108230844,LOC107747749,LOC106613701,LOC107757933 coding upstream 46512 14492005 ~ 14507388 (-)
AMCG00006020 NA coding upstream 100687 14546180 ~ 14546493 (-)
AMCG00006019 NA coding upstream 101451 14546944 ~ 14549687 (-)
AMCG00006035 NA coding upstream 143878 14589371 ~ 14593370 (-)
G155754 NA non-coding downstream 17164 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 71728 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 118796 14318979 ~ 14323114 (-)
G155701 NA non-coding downstream 136213 14300475 ~ 14305697 (-)
G155655 NA non-coding downstream 275506 14166179 ~ 14166404 (-)
G155768 NA non-coding upstream 43797 14489290 ~ 14491929 (-)
G155783 NA non-coding upstream 124069 14569562 ~ 14569836 (-)
G155899 NA non-coding upstream 534891 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 654816 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 733558 15179051 ~ 15217634 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 100307 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 270303 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 743376 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 858559 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1285592 13123557 ~ 13156318 (-)
G155770 LOC103376870 other upstream 63740 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 234304 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 337013 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 553007 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 987939 15433432 ~ 15491642 (-)

Expression


Co-expression Network