AMCG00006028


Basic Information

Item Value
gene id AMCG00006028
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14383670 ~ 14391108 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006028
ATGACTGATGCCCTTGCAGCAGGCTGTGCTCCGGGGAAGATGAGCGCCGGGCGGCCCCTCTCAGTCCTGGCCCTCCTGGCTGTGGCCCTGCGGCTCTGCGATgccagtgtgtctctgtctgtgcctTCCACTGTAGCCCTGGAGATCGGAAGTTCGAAGAATGTGACCATGGTGCCAAGTGCTCCGTTAAGTGTGGCAGCTGCCATTACCTTAAACGTAACCTTCTCCTCGAAAAATGCCTCCATTGTTAAGCTGCCAGAGCAGGTGGTTTTGCCTGCTGAAGAAACCTCCATAAGCTTTGAGGTGCAGGCACTAGATGTTGGGCAGGTGACCGTTCATCTAAGCAGCAACACCACTAATCTTACAAGGCGAGTTATTGACATTCTCACCAGAATCCGCTTTATGGTTGTACGAAGCAACGTCCTCGACATCATCAGCCAAGTGATCGGCTGGATTTATTTCCTGGCTTGGTCTATTTCTTTTTACCCCCAAGTCTATGAGAACTGGAGAAGAAAAAGTGTGGTGGGGCTCAATTTTGACTTCCTGGCGCTCAATTTGACTGGATTTATTGCATACAGCATTTTCAATGTCGCTCTCTTCTGGGTGCCCTATGTGAAAAACTACCAACTTCCTCCCTCTCACCTGCACCTTCTCCTTGCCCAGGAGGAATTCCTGAAATCCGACCCCAAAGGCAGAGGAGGCCAGAGAGTGTCCAAGGTGGCCATCGCCCTCCTGGTGATCGCCTGGGCCTTCGCGCTCTTCACTCTCTTCGTTGCGGTGGCCAATAAGATCAGCTGGCTGCAGTACCTCTACTACTTCTCCTACATCAAACTGGGTGTTACGCTGGTCAAATACATTCCTCAGGCCTACATGAACTACCAAAGGCAAAGCACAGAGGGCTGGAGCATCGGAAACGTTCTACTGGACTTCACCGGAGGGAGTTTCAGCATTATCCAGATGATCTTGCAGTCCTACAACAATGATCAATGGAGGCTGATTTTTGGAGACCCTACCAAGTTTGGTCTAGGGTTATTTTCTATATTCTTTGACATTTTGTTCATGGTTCAGCACTACTGTTTATATCGGCACAAAGCCCTCGAGTACCAGGGTCTAGAATAGCACGGTTCCTCTTGAACTTCCATGACCGCTCTCAAGGCACCTGCACCGTGGGCAAGAGGGTGTTCATCCTCTGGGCATTTTGGTCACTTCCAGCTCTTCCTGCACATGTTATCCAAAATAATGTAGGCAGTGATAGAACAGGCTttcaacactttttaaaatgatctacaaaatgttttcattcattcGCTTTTGGGGTTTTACAATTTAGTACTTTTCCAAatgtatatctattttttttatgccaaaattaaagattaaacagAATACAGATCTTGTAATGAGGTACATATTTTCTTGATTATCAATCATAAATCaagtaaacatattttataccACTTTTTCCATAGGAGGTTTATTTAAGACTTTAATTGGAAGTCCAAGGGTGAATTTGAAATTTTAATTCTTCACCCACCGAGGCAAAGATGCTGGTTAGGGAAGAGACCAATTATTTGCAGTAGATCTTAGCTACTATAAATAGGGAGACGTGGACATTATTTTGGCCTTTTTAACAGTAAATCTTTCAGTCCAGTGGCATTAGAGATGCTTATCATGACGTGGTAAACATCAAATACCAAATTTCAGGTTTAGAAGCTGAACTAATAATTGAAACGCTAAATAGTGTAATATTTAAAGACTAACACAATAAACACTATACGAATAATGCATTTACCACAGTTGAGgtatatatttagtttgaaGAACACGAAAGCAGTCTTAATTTTTGCTTAACATACTAGGTGTACAATGATGTATGACTCACAAATGCTTTTCTACATGCATTTTTGTAGAAGTAGAGAGCCAActatttattatactgtatgaaGAATTGtaaatctttttaaattgtttgatttttcaattttgtaatttgtatacGCAATTGATTTGTTTGATAATGTGTACAGCTAg

Function

GO: NA

KEGG:

id description
K12386 CTNS; cystinosin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006028 True 2031 mRNA 0.42 10 14383670 14391108

Neighbor

gene id symbol gene type direction distance location
AMCG00006015 cib3,LOC107687907 coding downstream 8727 14370409 ~ 14374943 (-)
AMCG00006014 NA coding downstream 111661 14264388 ~ 14272009 (-)
AMCG00006012 NA coding downstream 126932 14249791 ~ 14256738 (-)
AMCG00005996 LOC106613681 coding downstream 184756 14187248 ~ 14198914 (-)
AMCG00005998 crt,calr3,LOC102296215,LOC106573818,LOC100704618 coding downstream 204550 14173845 ~ 14179120 (-)
AMCG00006029 NA coding upstream 2346 14393454 ~ 14401173 (-)
AMCG00006027 NA coding upstream 50802 14441910 ~ 14445493 (-)
AMCG00006026 NA coding upstream 61910 14453018 ~ 14458341 (-)
AMCG00006018 slc1a6,LOC108437295,LOC105011479,LOC108230844,LOC107747749,LOC106613701,LOC107757933 coding upstream 100897 14492005 ~ 14507388 (-)
AMCG00006020 NA coding upstream 155072 14546180 ~ 14546493 (-)
G155717 NA non-coding downstream 13488 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 60556 14318979 ~ 14323114 (-)
G155701 NA non-coding downstream 77973 14300475 ~ 14305697 (-)
G155655 NA non-coding downstream 217266 14166179 ~ 14166404 (-)
G155652 NA non-coding downstream 291213 14089336 ~ 14092457 (-)
G155754 NA non-coding upstream 31396 14422504 ~ 14424746 (-)
G155768 NA non-coding upstream 98182 14489290 ~ 14491929 (-)
G155783 NA non-coding upstream 178454 14569562 ~ 14569836 (-)
G155899 NA non-coding upstream 589276 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 709201 15100309 ~ 15105533 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 42067 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 212063 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 685136 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 800319 13568467 ~ 13583351 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other downstream 1227352 13123557 ~ 13156318 (-)
G155770 LOC103376870 other upstream 118125 14509233 ~ 14509614 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 288689 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 391398 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 607392 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 1042324 15433432 ~ 15491642 (-)

Expression


Co-expression Network