AMCG00006032


Basic Information

Item Value
gene id AMCG00006032
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14889140 ~ 14907158 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006032
AGGTATCAtgacaaacaggaagtgaccaGTAACTTCCTGGGAGCCATGTGGCTAATTTCAATAACCTTCCTTTCGATTGGTTATGGAGACATGGTGCCTCACACATACTGCGGAAAGGGTGTGTGTCTGCTGACGGGAATTATGGTCAAAAACACGGCTGCAAACGTACTCAGGGAAACATGGCTCatctacaaacacacaaagctggTGAAGAAGATCGATCATGCCAGGGTGCGCAAACACCAGCGCAAGTTCTTGCAGGCCATTCACCAACTTCGCAGTGTGAAAATGGAACAGAGGAAACTGAACGACCAGGCAAATACACTAGTGGACTTGGCCAAGACGCAGAACGTGATGTATGATCTCGTGTCAGAGCTGCAGGAGCGCAGTGAGGAGCTGGACAAGCGCATCGGCACGCTGGAGGATAAGCTGGACTCCATCACCGGCAGCCTGCAGGCCCTGCCTGGCCTGCTCACCCAAGCCATAACGCAGCAGCAGCGGGACTTCCTGGACAGCTTTGCCCACCGTTTCCGGCCAGCCTCCCTGGGCTCGGAGCGCTCATGGACCCCCACTCGCCGGCGGCGCTCCCCCTCCACTGCGCCACACACCTCCTCCGACAGCGGCTAGCCCAAGGCACCGTGCCGCCCAAACGGCCACCGCGGACAGACGATGGTGaaactcaaattaaaacaactaaaagaatgaaaagaaacagaaacaaacaaaacaaacaaaacaaaaaaacggtAGAGAATATGGTTTATGTTTAGCCATTGTATGGCTGTTCAAGTTAGCTTTTTTGTAAAGCCCTTGTATAGTTACTAACTGAGTTCAGGGTGCTGGGGTGAAGCTGGCTATCACACCGGAGAGTCCTTAAACCAGAAGGGATGGAAAACCGCACAGAGCGGCGCTGCTCCGCGAGACACCAGGGGGTGATTGTGTGGCCGGGAGTGGATCTGCCGGGACTGAGAAACGTGGAGGAGAGCAAGAAACACATGAGCAGGGAATGGATATGCAATGGACTTCCTCTTTCACTTGAAAAGTATCAGAGGTCTCCCTGACACCAAGCTGGGAGCTGATGTTCTTTGGAAGCTCTGAAATCGGTATACTGGTGGGAGGCGAGGGAGAAGGGAAGGATGGGACACAACAGGCCAAGAGGGGGTAGGGGTGGCATTATTACCCCAGCGCTGTCAATTaccacaaagacaaacacactaGTGAAGACCTCACATTTGCTCCTACAATCTTAGTTGCAAGTGTAACTTGGAAATTTGGTACACATTGCTCTGTATAGTATGACACATTGTTATCTTGCTTGTAGCGCACATTCAGTGGCTATATAAACAACAGTGGATTGTCTTCCTTTCATATATTTAGGCAAATTCTCATACAAAAGGGTCAGAGTCTATTAATAAACTGGCCCTGGCCGGACATAGTTTGATGTTAAGGAAGTCCCTCAAGCAAAGAATCTGTAAAacaaagagaataaaaaagacCCACATATGTGTTCTGCAGTGAATGAGACAGATGTGAGGATAATTGGTCATTAATACAGAGAGATTCATCAATTTCCATTTCACCTCACTCTGCTGTCTTATTCTGTCAACTTTCTGCCTAGTTACACTCTCCATTTATTTGTGGATGTCAGCATAAGCCCTTATTTAATGTTGAAGAAACCAATGTGTACctctgcaaaaaaacaaaaataatggcCTTGGGAGAGTTATCCTgatttaaaaattcaaaataatttcttGTTCAAACCAGTGACTGATCAGAGCTTCCAAAGAGCTTCGGGCCACCAAGCAGGGAACCAATGAAAAGTGCCCCTTTGCCGGGGCTTCAAGTCTATTGGAAGAGGACAGCAGGCCACACCCACTGTGGACGGGCGGTTTTTAATGACAGAACTGAGAAACAAACCCCGCCCCCTTGCATGTTTCAATGCAATTGGTGATGGAGCTATCCTTCGGGATGGCtttatgttactttttttttcttttatctttttcttttggtttgttttttaccggaattcctttttttatcatttaactaggattttttttaaaaacaggtcAAATCTAATGCTTAACAGAGTGGCAGCAAAAGtgatcattaaaattaattaaaaaaaaatgcattcctaATTCTACCGTATTAATAGCACCACGAGAAATGAATCCAGAATTAATTATTTGGGAAAAATCACAAAACCGAATACACAGTTGGATGCTGTAATCCAATAAGTCCCTAATTTAGCTCCCAGTTCCAAGTTCAGAGCTGGAAGGCCTTTTTAGAAGACGTGTTTGCATCAGACAGCACTGATGACAGAATGAATGTTTAAGATAATATCTTACGGGTTTCAGATACTGTTTCTTATGGGGACTTCGACACGATTTACAAAGCTGTGACGCCTTTGCACAAAGTCAGTTGAATCCAAAGCGGTATTTACCGAGTTGCTTTAGCGTAACAAAAGGTACAGCAGACACTGCATGTCTTCGATCGAGGGTGTGGTGGCAGTGCTTTCTAAAGCAATCTGCAGAAAAGAGGAAAACGGAAGAGATGGTCACGCCTTGATTCATTTCAGCAGTGTCTACTGTTGTGAAGCATAGTTATATTTAGAGTATACATTGTTGTATCAAAGAGGGTCTGTTTCATAGCACTCATTGGCTCTGAACTACTGGGACCCAGGAAAAAGAATGATCAAAATCTGTGTTGGTGCTAAAGGACTACAGCTTTGTGAATAGGGCCAGTACCCTCCAATTTATAAAGAACTGTAAAACCTCAACTGCTGCTAAGCATTTCGGTGACTACTGTAGAAAAAGTGTACCACATTACTGTTTCAAAGTGCCATGGTTCCAACTCCAACTCAAGTGTCTGCAAGTCTGCAAAGCAATCCATCATCCTGGTGTATTCGTTAATGTCCTGATGCATTATGTGGTGTCACGTATGCTTAAGTGGGGAGCACTGCTAAAAGGCGCAGTTTTAACAGGGCAGAACACCGGAGGACTGATTGCCCACACTTGTCcattggtgttgtttttttctcattttgtggGTCTTTAATTAGTTGGTGGTCTATTAAGGACCTGGTACAATCTGGTCTTTGAAAGGATCAAGAACAGCCAAAGAACTGACACTGTGAAGGATttgtggtgaaacatttctgttgtttttgggtttttgttagtttgtctttctctttttttcctttctccgCCGCCGTGTGTGACTCGGAGATATTAATTTCTATTGTCGATAGAAGGCAAATGACAGATGAGATTCGGTGTTTCGTGTAGTTTCCGCACACTGATATTTCATTCTGTGTGAATGAACAGGATTTAAGTTGTACAAAGTCCCTCAGAACTAGGCACAATCCAGGGGAATCTTCCATTTACAGGATTTTCTTGCTGTTGCCATCAAGAAACAAATGTAGCATTTCGGAGGAGTTTCTTAAATCCTTCTGCAGGAGGAAAGTAGGTTTTGTACAGAGAGCAGACAAACTGAATTTGTAGCAGTGCGATGAGTTGTGGATCACCCTCCCAAAATAAGGAAGAATTCTTATCATTTTTGGGTCAGACATagcatacagtttattttaacataatctTTTTAGGAAGTTCTTTGGTGGCAGAATTTTCACCAGGTGACCAAGAACATGTTTGACCTTCTTTTCATCTGGACAGTTCTCTATCATTTTGACACTGTAGACATCTGCCTTTTGGCCAAGCTACTCTATCTCTTGAAGGACTTAAAAGGAATCACAGCTGCTATCTGCTATTAAACAGGCACATTTATTCACACCGACACTCCCAAACATGAACCCTGGCCGCTTGGGTCAAGAAATGCTGGCCGAAGGGATAAAGTAGTGCCTTTGCACTTCATAGGTTGAAGAAGGGGTTTCAATCCCTTATTGGAAAGGCAGAGTTAAGGGCTGGCACAGAGTGTGACCGAGATCTGTCAGGTCCAAAAGTCCAGCAAAAATCAATTTTGAATCAGAGAAGAGGAAAACAGCGAACATGCAAAACACCAGTTTCCTCAAACATGCCCATTTTACAGATAACTGAGTCTAAATTGCAGATTTGTGTCcatgtgtaaatgtttaaatgaaccatgtttttttttttttttttttttgctagcTCAGGGCCATAGATATAGACGACCGGGTTAGTacattgaaatgtgtatatggCTGTTCTGGATCTTGTAAAAGCATGCAAGCTAAAAGATCAGCTCTGtggaatgtgtttgtgtgtgtgtgtgggtgaggaGGGGTTCTCATCTGTTGCAAAcgtagctaaaacagcaatcaAATCCTCCGGTGTTTGTTTTTGGCCCTAATAGGTGAACAGAATTCTTGCACCTCGACTGAGAATAGTTCcacattttttaactttatttttttattggttgCTCCCCCTATgaatgggagagagggaaaggaatTTCCAAACacgcacaaaaataaataagtgaataaataagtggatgATCTTAATGATTCCCAAGACCTGATTGAATGTGACACCACCCAAGAAAGAGtgtaccaaaataaatgtaaaaaggcGCTGTTGTGTTGAACAAACCTGCCCTTTGGGACTTTGAAACAGTGTCtctgtgcattttaatgttGGTGTGGGGGCCCAGAAGACTGTACAGGAAGTAGGAAGCTGTGAATATGCCCTCAATGAGGATATCACAGACCAATGGTGGCTATCAAAGATACGATCAAGCTGTATGCAGCTGAGAAGTCTGCAATCCACCCTTTGTCCTTTACAGTATCAAATTCAAATGGCCCCAAACAGCAGTTCTactcccccccaacccccaggGGCCCACCCATGGCTCGTTCTGTGTACCTACCATTCCCACCCCAGCTTTGCCCCAGCATTTCGGTTCTTATAACAGAATCCAATGATTCATACTCCTCTGTAATAGCCAAATGTCaccacaatgtaaaaaaaaaactaaaaaaaacaaagatgataattatactaataaattaatggaaaaaaataagaagacgCAAGTAAGTATCTATTAGACCATATTATTTCTCGGTAGTGACATCAgatgatttataatttttttaacaggaaaacaaaacaaaaaaatgaaatgtataatcACTGTTTTATATACACTGCCACATTATGCATATCTAGTAGCACTGGAATAAAAAATCTGTAATGAATGGAGAACGGTGA

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006032 True 5210 mRNA 0.43 4 14889140 14907158

Neighbor

gene id symbol gene type direction distance location
AMCG00006044 NA coding downstream 13419 14866709 ~ 14875721 (-)
AMCG00006046 NA coding downstream 28405 14852157 ~ 14860735 (-)
AMCG00006047 NA coding downstream 37261 14850781 ~ 14851879 (-)
AMCG00006045 LOC107575641 coding downstream 75489 14804745 ~ 14813651 (-)
AMCG00006058 dda1 coding downstream 111055 14765995 ~ 14778085 (-)
AMCG00006033 LOC107589798,LOC107718068,LOC107722564,LOC107585128 coding upstream 13245 14920403 ~ 14931385 (-)
AMCG00006096 NA coding upstream 74643 14981801 ~ 14992261 (-)
AMCG00006103 NA coding upstream 123829 15030987 ~ 15031803 (-)
AMCG00006095 NA coding upstream 135025 15042183 ~ 15044491 (-)
AMCG00006097 NA coding upstream 143763 15050921 ~ 15060761 (-)
G155783 NA non-coding downstream 319304 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 397211 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 464394 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 518958 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 566026 14318979 ~ 14323114 (-)
G155899 NA non-coding upstream 73226 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 193151 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 271893 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 297711 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 300362 15207520 ~ 15318177 (-)
AMCG00006043 NA other downstream 104860 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 206160 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 379526 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 547537 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 717533 14159131 ~ 14171607 (-)
AMCG00006102 slc5a5 other upstream 91342 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 526274 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1046918 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1547126 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1598206 16505364 ~ 16521689 (-)

Expression


Co-expression Network