AMCG00006033 (LOC107589798,LOC107718068,LOC107722564,LOC107585128)


Basic Information

Item Value
gene id AMCG00006033
gene name LOC107589798,LOC107718068,LOC107722564,LOC107585128
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14920403 ~ 14931385 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006033
GTAAATGCTGAGCCCAAGAAGCTAAGCCATGCTGGATCCAAGCCCTCCCTCTCTGAGAGCTGTAACCCATTCCCCAAGATAGCCATGAACAGCTGCAAGTACAATGGGGGTGTGGTAAGACCCCTGGGCAGCCTGGGGTCGTCACGACGCAACCTCGCGGAGCTCGACTCGGAGACGCAGCCCCTCCAGACCCTGCACAGCTCTGGCCTGGAGGTGGTGGTCTCCAAGGGCAATGGCGAGGACCCCAGCAAGGCGTCCAGCGAGAGCCTGACCAGGGAGGGGGGTGGTGCGCCgcagaagaagaacaaggacaTCGGCTATAAGTTGGGCCACCGGAGGGCACTCTTTGAGAAGCGCAAGCGGCTCAGCGACTACGCCTTGATCTTCGGGATGTTCGGGATCGTCGTCATGGTGACCGAGACTGAACTCTCCTGGGGGGTTTACACTAAGGAATCTTCGTATTCATTTGCACTGAAATGCCTTATCAGCCTTTCCACTGTTATATTGCTTGGTCTCATTATAATGTACCATGCCAGAGAAATCCAGcTGTTCATGGTGGACAACGGGGCAGACGACTGGAGGATAGCCATGACCTACGAGCGGATCTTCTTCATCGTGCTGGAGCTGCTGGTGTGTGCCATCCACCCCATCCCAGGCCAGTATGTCTTCACCTGGACGGCCCGGCTGGCCTTCACCTACACGCCCTCGGTGGCCGACGCCGACGTGGACATCATCCTCTCCATCCCCATGTTCCTGCGTCTCTACCTGATCGGCCGCGTCATGCTGCTGCACAGCAAGCTGTTCACCGACGCCTCCTCGCGCAGCATCGGCGCCCTCAACAAGATCAACTTCAACACGCGCTTCATCAACTTCAACACGCGCTTCGTCATGAAGACGCTCATGACCATCTGTCCCGGCACCGTGCTCCTCGTCTTCAGTATCTCCTCCTGGATCATCGCTGCCTGGACCGTGCGTGTCTGTGAGAGGTATGCCCcatcctcccccaccccctccaggACCATAACACATGAACTTCCTGTACCATTTGGACCCATGAGCACCCCAGAGCTGATCAGTGTCCCACAGGCCCCAAGTAAACTTTTTAAGATGTCA

Function

NR:

description
PREDICTED: small conductance calcium-activated potassium channel protein 1-like isoform X1

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG:

id description
K04944 KCNN3, KCA2.3; potassium intermediate/small conductance calcium-activated channel subfamily N member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006033 True 1113 mRNA 0.57 4 14920403 14931385

Neighbor

gene id symbol gene type direction distance location
AMCG00006032 NA coding downstream 13245 14889140 ~ 14907158 (-)
AMCG00006044 NA coding downstream 44682 14866709 ~ 14875721 (-)
AMCG00006046 NA coding downstream 59668 14852157 ~ 14860735 (-)
AMCG00006047 NA coding downstream 68524 14850781 ~ 14851879 (-)
AMCG00006045 LOC107575641 coding downstream 106752 14804745 ~ 14813651 (-)
AMCG00006096 NA coding upstream 50416 14981801 ~ 14992261 (-)
AMCG00006103 NA coding upstream 99602 15030987 ~ 15031803 (-)
AMCG00006095 NA coding upstream 110798 15042183 ~ 15044491 (-)
AMCG00006097 NA coding upstream 119536 15050921 ~ 15060761 (-)
AMCG00006098 NA coding upstream 142815 15074200 ~ 15077768 (-)
G155783 NA non-coding downstream 350567 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 428474 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 495657 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 550221 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 597289 14318979 ~ 14323114 (-)
G155899 NA non-coding upstream 48999 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 168924 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 247666 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 273484 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 276135 15207520 ~ 15318177 (-)
AMCG00006043 NA other downstream 136123 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 237423 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 410789 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 578800 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 748796 14159131 ~ 14171607 (-)
AMCG00006102 slc5a5 other upstream 67115 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 502047 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1022691 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1522899 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1573979 16505364 ~ 16521689 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07712568_07742293 KCNN1, KCNN1A, KCNN1B coding CI01000004 null 7712478 ~ 7742293 (-)