AMCG00006038


Basic Information

Item Value
gene id AMCG00006038
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14663558 ~ 14670355 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006038
AAGCCATGGCTTTCCTATTCACTGTTGGACGAGCCGGACAGGCCTGGGCCAGGGACGGCACCCTTGCGATTTTCTGAGAACAGGACCGTCCTTGTGCAAAATTACTGCAACAACAGAGTGGCTTTGTACATGGGAACCAGGCTTTTTCTGACCAGGACAGGCTTTGACGGCTCCTTGTTCCCTCTACACTTCTCTGTAGATGAATCTTTCCAAGGCCTCTCTGGCATTGTCTCTTCTGCTGCCTTTGTGTTGGAGGACCTTGCCCTGGTGATTGATGGCAGGGTTTACATATACggtctaaaaaacaaaaactggactTCTGCCCAAGGTGTGGACTCACTGGTGACGGAGGTCTCTTCCTTACAGTGCTGTTTCAGTAAAGATGCTTCCTGCACGGGTGTGAGCACCACAGTCCTTGCCTACAACAGAGGGCACCCTGTGTCAGATTCGCATGTGTTCCTCTCTTCCAATGGGGGATTCACTTTTGAGAGATTTACTCTGCGACCTACATTACAAAAGAGATTTGTATCTGGCAGGGGGCTGTTGAGGGGGTCTTCAACATACCTGCACTATCAGCCATACTGGTGCTCAAAACAGACAACAATGGCACGCTACGAGTTGTCGGATTTAAACTCGAGCTCCACTGGGTTCTCCCTGAGGGACCCGTCCAGCTCAGTGACTGTGGTCCAGCCCGCAGGCCTCAGTGGACACCTAGTGATCTGGACCCCCCAATCTCTGCTCTTCTCCCCGAACCACGgaCAAGTTGTACTTCCAGTAGAGCTGAGGGGTGATTATGAGGGGGGACAATTCCCGGGCTCTGATGTCATTATCCAGCAGGTCACCACAAGCGAGTACAGCGAGATTGCAGTCCTGACCAGTGGCAGCCTTCTGTACTACGGCACCCTCGGGATGGACGCATCAGTGGTCAAGATCAAGATCCTCACGGATTTCTCCGAGCAGGCAGTGCTCTCTTTCGGCCTGCTTGGAGAGCTGCTGGTGAGCCAGCCGGTTGACGACCCCGATGTGGGGGGGGTGGACTTCAGCCACGAGCTTATCATTGTTCAACATGAGCTCCAACTCGTGACCCCCCCACTGGGCACCTGTCCGGTGGGAATGCTGCATGGCTCGTTTGATGGGCAGGCGTACTACATTGACACGGAAGATGTTTTAGACTTCTCTGCGGTTTTTATTCCCTTGCCCCCCAGTAAAGCTTTTCCTTTGGTAACAGTAACTGATCCGCATATACTGGCTTTTCAAGCGGTCTCTAAAGAAAGTGGCATGACTTCAGAGGGGAACAAGAGATATACACTGCTCTCTGGACGGAGGAATGTCACTGCTTGCACCAAGGGGAAACTTACCCAGAGCACACTGCAGAACTTCTACTCCTACACCATTTCAAAGAACATATACGACCCCCAGGGACTTTTCCGGCAGAATTCAGCAACAGAAGACCTCAATGTGCTCTACAGCTTCGCCGATTACCAATGCCCCCTGCTGGTGAAATATGATTCACTCTGGCTGCCAACCTTCGAACTgtGGGCCAACAGACAGTTTGTGGAGCTTGTCCCAGCGGACTTCGTCTTGTTTGAAGTGCATGGGATGTACAACTATGGTTACCTGCAGAGTGTGAGCAGTACCGACTGTGTATCCCAGCCCCAGACCTGGAGGTCCATGCTGGATGCCCAACTGCAGCCCGACCCCAGCACTGCCTGGACCAGAAGGAATTACAGGAGCTGCAATGACCCAGAAGGGCCCACCCTGACCTCTCCATGGGTATACTATGAGGTTCTGAGAGCTGGCTCGGAGAACAGGATTGCGTTTCCCAACTACAACGGCATTTACATATTCAAAGCCACTGTGGTGGACCCCATGTACAGtTTCTGTGAGCTCTCCACCACCTTCAGCGTCTACGTGTACGGTGCTCCCCCCGAGGAGAGGACTACCAAAGGCTTGGCCCTGGGCATCTTCCTCACCGTATTCATGGGACTGCTGTTATTCCGGTTCGTTTTACAATCTGCACCAAAGGCC

Function

GO: NA

KEGG:

id description
K16895 CATSPERD; cation channel sperm-associated protein subunit delta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006038 True 2028 mRNA 0.53 19 14663558 14670355

Neighbor

gene id symbol gene type direction distance location
AMCG00006036 NA coding downstream 1049 14660585 ~ 14662509 (-)
AMCG00006039 nduab,ndufa11,LOC106613708 coding downstream 11805 14647589 ~ 14651753 (-)
AMCG00006035 NA coding downstream 70188 14589371 ~ 14593370 (-)
AMCG00006019 NA coding downstream 113871 14546944 ~ 14549687 (-)
AMCG00006020 NA coding downstream 117065 14546180 ~ 14546493 (-)
AMCG00006057 NA coding upstream 35196 14705551 ~ 14718570 (-)
AMCG00006058 dda1 coding upstream 95640 14765995 ~ 14778085 (-)
AMCG00006045 LOC107575641 coding upstream 134390 14804745 ~ 14813651 (-)
AMCG00006047 NA coding upstream 180426 14850781 ~ 14851879 (-)
AMCG00006046 NA coding upstream 181802 14852157 ~ 14860735 (-)
G155783 NA non-coding downstream 93722 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 171629 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 238812 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 293376 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 340444 14318979 ~ 14323114 (-)
G155899 NA non-coding upstream 310029 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 429954 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 508696 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 534514 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 537165 15207520 ~ 15318177 (-)
G155770 LOC103376870 other downstream 153944 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 321955 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 491951 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 965024 13664064 ~ 13698534 (-)
AMCG00005977 LOC106573600,LOC106613740,LOC105011525 other downstream 1080207 13568467 ~ 13583351 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other upstream 9442 14679797 ~ 14682980 (-)
AMCG00006043 NA other upstream 112151 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 328145 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 763077 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1283721 15954076 ~ 15957090 (-)

Expression


Co-expression Network