AMCG00006040 (nr2f6,LOC108238456,LOC103359430,LOC101171737)


Basic Information

Item Value
gene id AMCG00006040
gene name nr2f6,LOC108238456,LOC103359430,LOC101171737
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14838689 ~ 14848138 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006040
CCACCATTTCCTCATCTTcttatttatgcttttttttctttccaagcaGTGAAGTAGGAAAGAGTAAAGTGATACCAGGAGAACTGTCAGATTGAGTGATACTGCTTTCTCCCATCCGAGAACGAGTTAGACTGGTTTGTCAAAAGGCAgcactttttttctattttttcctgtttttttatttgagtgtgtactctttctgtctctccgtGTATAAGGTGAAGGGTCTCCGGATCTGAGGAGAACACAAGACCCAGACATttaagaagaggaagaagaaaaccaaaatCTTCAAGGCAgctctccttttcttttcctctggAACGGTGTGGCGAATGAAAACTGGTTTGTGCAAGCGTGCACGGCAGTGTGTAATTTATTGTTTCCTGTGAAAGGCCTGGCCGGGCCCTACTCCTTGCACTGTGAACCTGTTGTTCCGCAGATTGAAAGACAAGAGGAGTCGAGGGGGTGGTTATCagaacagaggagagagagagagagagagagagagagagagagagagaaagagaggtctGGACTACTCTGAAACTGTAAGTCGACTTGGGAAGAAGCCCTTTTGTAGGTCCCTGCTGTTTTAAAGGAAGCTCCCTCATGCACAAATAATACAAGGAATCAAGAAGAGATTTTGAAGCCTGCTTGTctgtgactttaaaaaaaattggacCAGAACTTGCTGTGTCTGAGAATTGTTTGCTTGGGTTGATTTGACTGGTCCATGCAGGTTTCATACCGCTGAAAAGCTTGAGGTTGGACTTTCAAGTCTGGAGCATTAGACAGAAGAAGTCATTAAGGGCAAACATCTATTGACCaaaaggaaagcaaacaatCACAAACTGCCTGCCATTAACAGGTTCAAGAGGAAACTCAGTCGTGGGGTTTGCCAGCTTCTGGAGTCCCACCTCAGCTCGATCCCGCAGCTTCGCCAAGTGTAGGGCTGGAGCTTTAGACCGAGCACCCCAGATTTGGACTGGCAGCGCTATGGCCATGGTGAGTGGGGGATGGGGAGACCCTAACGGGGACACCAACGGACTGGGGGAAAAGGGGGTCTACCtgcgggaggaggaggacggcTCCCCTCAAGCGGGGGGCAGCGACGCCGAAGCCGGGGAGGAGGACAAGGCCTGCGTGGTGGACTGTGTGGTGTGCGGGGACAAGTCCAGTGGGAAACACTATGGCGTCTTCACCTGCGAGGGCTGCAAGAGCTTTTTCAAGAGGAGCATCCGTCGCAACCTCAGCTACACCTGCAGGTCGAACCGCGACTGCCAGATCGACCAGCATCACCGCAACCAGTGCCAGTACTGCCGTCTCAAAAAGTGCTTCCGCGTGGGCATGCGCAAAGAAGCTGTGCAGCGTGGCCGCATCCCCCCGTCCCACTCAGGAATCAGCCCCACGTCCACGCCGGGCGCCGGAGGGGCCGATTTCTTCAACGGGCAGCCGGTGTCCGAGCTCATCTCGCAGCTGCTGCGCGCCGAGCCCTACCCCAGCAGCCGCTACGGGTCGCAGTtcagccagcagcagcagggcagCAGCGTGATGGGCATCGACAACATCTgcgagctggccgcccggctgCTGTTCAGCACCATCGAGTGGGCGCGCAACATCCCCTACTTCCCCGAGCTGCCCGTGTCCGAGCAGGTGGCCCTGCTGCGGCTCAGCTGGAGCGAGCTCTTCATCCTCAACGCCGCCCAGTCCGCCCTGCCCCTCCACATGGCGCCCCTCCTGGCCGCCGCCGGCTTCCACTCCTCCCCCATGTCGGCTGAGCGCGTCGTCTCCTTCATGGACCAGGTGCGGGTCTTCCAGGACCAGGTGGATAAGCTGACCCGGCTACAGGTGGACTCGGCCGAGTACAGCTGCCTCAAAGCCATCGCCCTCTTCTCCCCAGATGCCTGTGGGCTGACTGACCCGGCCCATGTGGAGAGCCTGCAGGAGAAGGCCCAGGTGGCGCTGACGGAGTACGAGCGCACACAGTACCCCGGGCAGCCCCAGCGCTTTGGCCGCCTGCTGCTGCGCCTCCCCGCCCTCAGGGCCGTGCCCGCCGCGCTTATCTCCCAGCTGTTCTTTATGCGGCTCGTGGGTAAGACGCCCATCGAGACGCTCATCCGCGACATGCAGCTCTCCGGCAGCTCCATCAGCTGGCCATACGTGCCTGGGCAGTAGTGGGGCCCTTTCCCATCATGCTCTGGGGCTCTCTCACTTTCATTGTTAGGCATCCAAGTAGTGCAGTCTGCAGATGTGGGTCTCAGGGGTTTGCTACAGATTGTTACATTGAAGGAAGCTCTTTCACGTTCTCTCGGAGATTACAGGACACGCTACAGCACCGACACACTACCAACGAGCGTCATTTTGGACGTCTGCAAGAAGAGCTCCTTTCCGGAAGCTgtcttcagagagagagagagagagagagagagagagatcaggtgTTTGCAGACTGCCTGGATTACTCTCTCCAAGATGggatgttaaaatatatttttttcttttcccccatAAATTTTACTAAAACTGCGGTTCCAGTGTTGTGAATTAGATTAGAAAGCCCAGCTGGTTTTAAATCTCCGAATGCCAGTGCTGAATAAGACGAGCTTGAACTTTTATGTAGTGTAAGGGTTTCAAATAGAGGTCTGAATCAGATGGATTGAGTTGATGAGGTAAATACAGAGACTATCGGATTGAAAAAAGGCCCAAGCAGGATATAATTGGTTTGTGAATTTACTAACAAGATTAACACAATATTTGAAACAGTTggttatatattaataaaaagagCGACAGCGTTTAACAACCATCTAACTCAACAGTAAGGTGTCAAACCTTCGGACTCATCTTCTCCTTTACCTGGATTAATATTCCATATAAAAAGTCACAGAATGCCTTCTTTCCAAATGCTGTTCGCATTCTCCTTTGACTGAAGACTGCAATGAACATATGAAACATGACTGGTCTCATATATGCTTATAACATCTGCGAAAAGGACTTGAGAAAAACCCAGACGAGTGAAAGCACTGTTCAAAGAAACGTCTTAAAATCTATCAACACTGGATTCCTGCTctcagagaagaaaaaactatcAATCCGTTCCATCGCGACTTTGAATAACAATGTATGATAatagctttgtgtgtgtgtcatactgctacagtgtgaaaacaaaatccagtgtattgttttgtgtagaTCTAGGCTACCTGTGGAATTACACATTCAGAAGCTGGCTGTTCGCTTCGTTCACCTAGCTCAGCTTGCTTTTGTTCGTTTTTTGCTTTAACTTCAAATATTTCCAGTATCTCTTGAGGATCATTTGGACTTGCTAATTATATGTAACCCCCCCAACTAATGAAGTAAACTACACCAACCCCATTGCTCTCCACGTCTTCAGTAATCCACAGTGTGAATGTTCAGCACACAACGGGTCTGGTACTACAACCAAAACACATGgggtctttttttatatatatatgtccgTTCAGTAATGCACTCAACACTACAGTGGAAGTTAAGATTGTGTTGGACTGGAGTTGGGGGTTAAATGCCACGCCCCTCTACGATTGTCGGCATGGCTGCTGACGAATTCTTCATTAGTCCtcatgttttgatctgtaatgtATGTAAGCTCAGAATGGACCGTTTAACCCCCCAGTATGGGTGAAAATGCCTGGAATCCCAAATCCTAGGAATAGCTAGGACTTACCTCATATCTATGCTTTCACACAACTGGGACTTGAACACTAAACATTACGGTTCAACCCGTGaatgattttgatttttcttagctttaaaaaaaatgaaaaatggaaaaaaaaaaaagtaataataataaaattgtcaAAAGTATGACTACATAATAAAAGTCACCAAATCACAATGTGAACATGTGCGCTTACTTCTATGATTGTCAAaataatctctctctgtctctctctctctctctttctctctctctctatatatatatataaatatatatttttcaggttaatgattgttataattttgtttttgttggttcttttgttttctacactttgtttctgatgtttaaaaaaaaaaaaaaagaatgaggCATCTTTTGACTTGCCTTTCTGCAGATTTTACTTCACCTCCGATGTGACTTTTTCTACTCACAGGAGGAAAACCCAGTCGAACCCCAAGTTCTGGTTCTTGCTGGTGCCAAGACTGAAGGTTCGGTTTTGCCCTTCAAAAGTGGGGTAGAGAACAGACTGAGGGGTTGAGCATATTCCCTGAAAGTGGAATTAAACTTGTAAGGGAAATTTTGCTAGCATAGGGCATTGTAAGGACAGATTGACCAATTATAAGACTTCTCAATGACAACTAATGATATctgatgaaaaacaatacaatattttacgGGCGTGTAAGATGTTGCTTTGTGTCTGAGCAGTTGCAAGAAATAAAGGATGGGGgttttaaatactatttatgTGTACGCGTTTTGAACTATATCTCCAACAGTG

Function

symbol description
nr2f6 Enables DNA-binding transcription factor activity and sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus.

NR:

description
PREDICTED: nuclear receptor subfamily 2 group F member 6-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08549 NR2F6, EAR2; nuclear receptor subfamily 2 group F member 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006040 True 4499 mRNA 0.47 4 14838689 14848138

Neighbor

gene id symbol gene type direction distance location
AMCG00006041 NA coding upstream 11162 14819668 ~ 14827527 (+)
AMCG00006042 NA coding upstream 39834 14796612 ~ 14798855 (+)
AMCG00006055 ano8,LOC103359425 coding upstream 82479 14742197 ~ 14756210 (+)
AMCG00006053 NA coding upstream 131565 14700791 ~ 14707124 (+)
AMCG00006056 NA coding upstream 144101 14686100 ~ 14694588 (+)
AMCG00006031 NA coding downstream 142756 14990894 ~ 14991358 (+)
AMCG00006030 NA coding downstream 170648 15018786 ~ 15041927 (+)
AMCG00006093 NA coding downstream 243879 15092017 ~ 15096837 (+)
AMCG00006091 NA coding downstream 300800 15148938 ~ 15156505 (+)
AMCG00006090 NA coding downstream 333826 15181964 ~ 15185213 (+)
G155832 NA non-coding upstream 76961 14760397 ~ 14761728 (+)
G155790 rpl36,LOC107678109,LOC107741803,LOC107744644 non-coding upstream 155687 14628442 ~ 14683002 (+)
G155774 NA non-coding upstream 289621 14548596 ~ 14549068 (+)
G155773 LOC106568166,LOC108280735,LOC103375566 non-coding upstream 290536 14547659 ~ 14548153 (+)
G155772 NA non-coding upstream 291089 14547370 ~ 14547600 (+)
G155856 NA non-coding downstream 17776 14865914 ~ 14866479 (+)
G155897 NA non-coding downstream 131167 14979305 ~ 14980490 (+)
G155898 NA non-coding downstream 132963 14981101 ~ 14981620 (+)
G155913 NA non-coding downstream 202717 15050855 ~ 15055957 (+)
G155929 NA non-coding downstream 252182 15100320 ~ 15103379 (+)
AMCG00006034 vmac,LOC106573562 other upstream 179192 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 413943 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 455109 14375995 ~ 14383580 (+)
G155638 NA other upstream 728819 14108173 ~ 14109870 (+)
G155637 eps15l1,LOC107592720 other upstream 739993 14097804 ~ 14098696 (+)
AMCG00006092 rps28 other downstream 255318 15103456 ~ 15105567 (+)
G155932 NA other downstream 259071 15107209 ~ 15107734 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 729946 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 1116295 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 1184754 16032892 ~ 16035969 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003191 nr2f6b coding NC_007122.7 CM002895.2 6115621 ~ 6134583 (+)
grasscarp (Ctenopharyngodon idella) CI01000004_07686845_07692184 NR2F6, NR2F6A, NR2F6B coding CI01000004 null 7686018 ~ 7693082 (+)