AMCG00006041


Basic Information

Item Value
gene id AMCG00006041
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14819668 ~ 14827527 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006041
caagaacacacacacagaggacagaggagACTGTAGCAGACAGGAAGCCTCTCTCTGGGATAGGGTGGGCGGCTGGGTCAATGTTAGCTTATTTGGTCCCATTAGCATTATGCAAGGTGCCTTGTTTTGACGGAGGTGATTCTGTGCAACTGGGATTGAACTGGAACACTGACACTGCTTAGTCTCTCTGAAACAACACAACTTGGAGCCAGCAACAGAAGGAGAGGAGTGGCCTGAATGATATTAGTTAGCATACAGATGGATAGAGCAGTTAGTGCAGATCTGTACCAGCAACTGAAGGATTTGAGGCCAAAAAAAATAGAACTGCTGCACTGAGTGCCTGTAAAGCTGGCAGTATTTCTCAATGGACACTAAAGACCCCTTAGGAGAAGAAATGAGTGCCCAGACTGATGCGGTTGGTGGGGGCCCTTCTGTGCCTGGGGAAGCTCCAAAATATGAGGATGAGCCTCCAACCCCCAATGTTGTTGACCAGGAGTTGAACCAGTGTGAGCAAGAGGTTGGCGGCTTGCCAAGGGAAATTGCGGAGCTAAACAGGAAACTGGGAAAGCAGCAGAATCCTAGGGACAACAGGGATTCCCATTCCATTCCAGAGCCTCATAGCAGCCCACAGTCCCAGCGCCCACAAGACCATTTAGGCCCACCCTGTGAGGGACCAAACCCTGGGAAAGGTGGCAGTGCTGAACTGTGGGCAGAGCTGCAGGGGGTCCTGGCTGCCCTGGAGAATTCCGTTCAAGGGAGGAAGACTGGGGCTGCCCCAGAGACTGCCTGCGATgaagagagacaaacagagcaCCTGCGGGCTGCCAGGGAGAGCTGGGTCCAGGTCACACAGATCCTGGAGGAGATGGATAGAGAGTTTGGGATCTCCTACCCCTCGGGCCTACCAGATGAGGAGCGCCGCCAGTTTCAGAGAGACGTGCTGACCTACCATCAGAAAAACTGTGACCTCGGTGCAAGCCTGCAGCACCGGGAGGAGGAGCTTAGACGGTCAAAGAGCACACTGAACGCGCTGCAGGAAGAGCGGGAGAGGCTCAAAGCAAAGCTTTTGGGTCTCCAACATATCCTGCAGAGCAAGGGTAGCCTGTCTCCCCCTACTAGCCCCTCTAGCTCTTCCAGTGGAGTCTTTAGCCCCTGCTGCTCCTCTCCAGCCTGCCCTGGCTCTCCCCTGCTCCTGAGACACCCTGAGCGTGCTGTTCCTGCCCTGGCCACAGGGGGCAATAAAGTGTCTTCTACCCCTTCCTCCCCTACTCCTGGAACTCCAGCCTCCCCCAGGCAccagctctccaggaccagcagCTTCGAGAGTGAAACTGAGCGACTGCAGAGGTGCATTGAGAGGCTGAAGTCGCGGAATGAACGTCTGTCTGCAGCTCTGGAGAGGAGGAAAGGAGAGTCAGAGCAAATCAGCATGACACTCAGCCAACACGAGGccaacagcactgcactgcagatGGCTCTGAGATACAGCGAGGAGTGTGAGGAGGCCTACAGCGAGCTGATTTCTCTGTATCAGGACAGGAAGGAGAGGCTGCAGGAAACAGCATGGGCTGcagAGTCTGCCAAAGAGACAGAGCAGCCGCGTTGCACCGACCGTGAACACAGGAGCCCCGAGACAGGGGAGTCCTCTCTTTTGCCACTAGGGGGCACTGTGGATACCAATGAAGCACAACACACTGAACGAAAGGAGGATGCCATTCGGGAGAGGATCCAGAGGCTGAAGCATGACAGGGCGTCGGTATGCGTCCCTGCCACAGAGCCCGATGGAGAAGCCAAACCCAGCCCAGACACTGACACCCTGCCAGGGTACAGGGGCCAGGACTTTGCCAGACCTCACAGCACCAAGACAGAGAAGGCGATATTGTTGCAGGAGCTGGTTACTGTCAGGGAGGAGATGTCAGAGCTGCGGGCGGAGATAAGGCTGGCGGAGAAGGAGAGGCGCTGCCTGGAGTGGACGCTCACGGCTCAGAGGGCACAGGAGGTAGCCAGGGGGCTAATAGCGGGCAGCCTGAGAGAGGATCTGGAGGAGGGGCAGAGACCTCCAAAGCAGGGAACCCCTCTACTAACTGCTAACGAGGGGAACCCCGTACCCCAAAACCAGACCATCCTGAGGGAGATTGAGGCAGCTTTGCAGAGGGAACAGGTGCTGAGGAAGAGGGTGACGGATCTGCGTGGGTCCCTGGAGTCGGTGTTGCTGGACAGCTCTCTCCGCATGAGGCAGAGTGACAAACTGACCGCCCAGCTCCGCCAGGCCAACAGCAGTGTGAACGGTGCCTACAGGTGCGCCCGCAGGAAGTACCGGGAGCAGGTGTGGCAGCTGGAGCGGCAGGTGGTGGCAatggcagagagacacagcaTTCAGATTGGGGGCCTGAAGGGGGCACTGCAAACGCTCGAGTTGAAGAAGGCCGAGGCGAATCTGTAGCAACATCTCATCAAGCCCCTCACTCCGGCTGGGGGATCTGAAAAAGCAGAGTCCGCTTCTAGACTCCTACACACCCAGGCTGCAGTGCTGTACCATCAGCAGAAGAGGGCGCATGGTCTTTGTTTCAGTCCCAGAGTCCAGGACAGACCAAGAGAGGTGTGCGAGGGATTGGATTTCTGCCTGGCATCCTTCCTAGTTTTCATCCGATCTGGTTTTCATCCGAAAGGGTATTGCAGAGAAAATGCTGCCCAGCATATTACCTGGGATGACTTACAGTATTAGAAATGGACCGTGTCTTTGCCATTCACCCGTATTAAGTGACACacaatgtgtgtatttacatgGAGGGTTTGAAGTGTTTGTACTGAATACAGACGGTTTGTTATGCGTTTCCATTCTCGCATTTCTAGTCTTTCAGGGCCATTACAACTTTCATTAaaccctcccccccaaaaaacagtGACTTGCACTGACAATATCAAGACAATGATCGTCTGTACTTTCTGTTCCCTGTGTGAATGATCTAAATCAGGGGTGTCAGagtccagtcctggggggctgcagtgtctgctgttttttttccaacaggagatgccaattacttaattaatgtaattatttaatcaagtatgtttatgtaaaactatcatattcattttttatagcTGATATcttacaatttgttgatgactcaaaacactgaacccacaaaacatttcagagtctggagagactgttaactgttaaattaattggtctaattaaacaattaactggattaagGAGCCAAGATCCAGGCGAAACCAAGCAGAgactgtggccccccaggaaTGGAGTCTGACATCCccagatttaaatgcatttgtaaagaCTTGTTAAGGGACAACAAGATGAACAAAATCAGCTAATAtttcaattcattaaaaaaaaggactgAAACAAAACAGGCAACTCAAGAGCTCTCGTCTGCCTTTGTCTTTGTTATGGGggaaattaattcaataaaataaaataaaataaagaaaaaagcttagagttgaaaaaca

Function

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006041 True 3489 mRNA 0.52 13 14819668 14827527

Neighbor

gene id symbol gene type direction distance location
AMCG00006042 NA coding upstream 20813 14796612 ~ 14798855 (+)
AMCG00006055 ano8,LOC103359425 coding upstream 63458 14742197 ~ 14756210 (+)
AMCG00006053 NA coding upstream 112544 14700791 ~ 14707124 (+)
AMCG00006056 NA coding upstream 125080 14686100 ~ 14694588 (+)
AMCG00006054 lonp1,LOC107744642,LOC107548847,LOC107678106,LOC107679084 coding upstream 138483 14671161 ~ 14681185 (+)
AMCG00006040 nr2f6,LOC108238456,LOC103359430,LOC101171737 coding downstream 11162 14838689 ~ 14848138 (+)
AMCG00006031 NA coding downstream 163367 14990894 ~ 14991358 (+)
AMCG00006030 NA coding downstream 191259 15018786 ~ 15041927 (+)
AMCG00006093 NA coding downstream 264490 15092017 ~ 15096837 (+)
AMCG00006091 NA coding downstream 321411 15148938 ~ 15156505 (+)
G155832 NA non-coding upstream 57940 14760397 ~ 14761728 (+)
G155790 rpl36,LOC107678109,LOC107741803,LOC107744644 non-coding upstream 136666 14628442 ~ 14683002 (+)
G155774 NA non-coding upstream 270600 14548596 ~ 14549068 (+)
G155773 LOC106568166,LOC108280735,LOC103375566 non-coding upstream 271515 14547659 ~ 14548153 (+)
G155772 NA non-coding upstream 272068 14547370 ~ 14547600 (+)
G155856 NA non-coding downstream 38387 14865914 ~ 14866479 (+)
G155897 NA non-coding downstream 151778 14979305 ~ 14980490 (+)
G155898 NA non-coding downstream 153574 14981101 ~ 14981620 (+)
G155913 NA non-coding downstream 223328 15050855 ~ 15055957 (+)
G155929 NA non-coding downstream 272793 15100320 ~ 15103379 (+)
AMCG00006034 vmac,LOC106573562 other upstream 160171 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 394922 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 436088 14375995 ~ 14383580 (+)
G155638 NA other upstream 709798 14108173 ~ 14109870 (+)
G155637 eps15l1,LOC107592720 other upstream 720972 14097804 ~ 14098696 (+)
AMCG00006092 rps28 other downstream 275929 15103456 ~ 15105567 (+)
G155932 NA other downstream 279682 15107209 ~ 15107734 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 750557 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 1136906 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 1205365 16032892 ~ 16035969 (+)

Expression


Co-expression Network