AMCG00006043


Basic Information

Item Value
gene id AMCG00006043
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14782506 ~ 14784280 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006043
GTTGTAATTCACGTGTGCGGGTTGGGTTTTGTAGATAGTACATAGGAGTAGctgcattaataatacaataataattcaatttcaCAACGTCAGAATAACTAATTGATATGTTGCCTTTATTGTTAGCGCACTAAATGCCTATTTCATCTGTTAGTTGTTGTTAATGGGATGTAATAAAGGGGCATCTTTCGTAACTACAATTCCCACAACACACCGGGCGCCTATAAGCTACCCTCCCATTGGCTCATTCTCCTGGCCAGTCACAGTTGCGTGTGCTCCGTGTGTTCGGTCTGCGTGAGTTTAGAGTGACATTGCCAAGGAGCAgttgctttaaattaaataattagagaCATAATGAATTTCTTGAGACCGACCTGGCTGTTGTTTAGCGGGATTAGGAGCAGTCCTTCCAGGGTCCTTCTGAAGCCCAGTCCAGTGTCCAGTGCTTCTAATCTCCGACAGGCCAGCGGCTGGATCCTGTCTCGGGCTGCCACTGAGTGTGCGGCCTTCCCCTGGGGCATTGTGGGCCAGGCGGAGGGGGCGGGGGTCCTGCAGCAGCTCCCCTGGCAACACCAGCAGATCCGTACCCGCAAGCGTGGCACGGAGTACCAGCCCAACAACATCAAGCGCAAGAGGACCCACGGGTGGATCAAGAGGATCAGCACGCGGGGGGGCATCGAGGTGATCCTGCGCCGGATGCTCAAAGGGCGGAAGTCGCTCACACACTGAATGGCAAACCCGTCATCGTCCGGAAAACACCACTGCCACTCAGTTTCACTATCCCGAACTTGCTCAGACTCAGCTTGGCTTCAGGGCCAGTGATCTTGACTTGGgatcctgttcttctctcaacaTCTGGAGTTTTGcagctggactggactgtgcaGACACACGTAGGAGGCATTTTCACAAAGGCCTACTTCAGTTCTAAATATTGTCTGGTTTTACATAATAACACCctaaacttttaatttgtaatgcattaCCCAATGAGACCAAGGTTGTGTTGAATGGATATGACCTGAATCAGCCCATTTATACATGAAGGACATGCTGCCCagaatgattgtgttttttgtttttcttgaatggatcaatatttaataaaatattttttccctgaaTGTTTGCGGTTTGACACCTTTACTACTATGTCATCAAAATGGATGATAGCAAATTGCTACAAAAATCTAATCCTCAAATTCAAAGAAATAAGTGTAATATAGTTGTGGACTTTAAATAGTTAtttctaatttacatttttaaaggaagGCTAATTGCATATTTACAGGTCTTTTAATTGTTCTctcaatattttgcatttcgGACTAGTTATAG
>TU196327
GCTCCGTGTGTTCGGTCTGCGTGAGTTTAGAGTGACATTGCCAAGGAGCAgttgctttaaattaaataattagagaCATAATGAATTTCTTGAGACCGACCTGGCTGTTGTTTAGCGGGATTAGGAGCAGTCCTTCCAGGGTCCTTCTGAAGCCCAGTCCAGTGTCCAGTGCTTCTAATCTCCGACAGGCCAGCGGCTGGATCCTGTCTCGGGCTGCCACTGAGTGTGCGGCCTTCCCCTGGGGCATTGTGGGCCAGGCGGAGGGGGCGGGGGTCCTGCAGCAGCTCCCCTGGCAACACCAGCAGATCCGTACCCGCAAGCGTGGCACGGAGTACCAGCCCAACAACATCAAGCGCAAGAGGACCCACGGGTGGATCAAGAGGATCAGCACGCGGGGGGGCATCGAGGTGATCCTGCGCCGGATGCTCAAAGGGCGGAAGTCGCTCACACACTGAATGGCAAACCCGTCATCGTCCGGAAAACACCACTGCCACTCAGTTTCACTATCCCGAACTTGCTCAGACTCAGCTTGGCTTCAGGGCCAGTGATCTTGACTTGGgatcctgttcttctctcaacaTCTGGAGTTTTGcagctggactggactgtgcaGACACACGTAGGAGGCATTTTCACAAAGGCCTACTTCAGTTCTAAATATTGTCTGGTTTTACATAATAACACCctaaacttttaatttgtaatgcattaCCCAATGAGACCAAGGTTGTGTTGAATGGATATGACCTGAATCAGCCCATTTATACATGAAGGACATGCTGCCCagaatgattgtgttttttgtttttcttgaatggatcaatatttaataaaatattttttccctgaaTGTTTGCGGTTTGACACCTTTACTACTATGTCATCAAAATGGATGATAGCAAATTGCTACAAAAATCTAATCCTCAAATTCAAAGAAAT

Function

GO:      GO:0030529

KEGG:

id description
K02914 RP-L34, MRPL34, rpmH; large subunit ribosomal protein L34

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006043 True 1338 mRNA 0.45 2 14782506 14784280
TU196327 False 939 TUCP 0.49 2 14782631 14784006

Neighbor

gene id symbol gene type direction distance location
AMCG00006058 dda1 coding downstream 4421 14765995 ~ 14778085 (-)
AMCG00006057 NA coding downstream 63936 14705551 ~ 14718570 (-)
AMCG00006038 NA coding downstream 112151 14663558 ~ 14670355 (-)
AMCG00006036 NA coding downstream 119997 14660585 ~ 14662509 (-)
AMCG00006039 nduab,ndufa11,LOC106613708 coding downstream 130753 14647589 ~ 14651753 (-)
AMCG00006045 LOC107575641 coding upstream 20465 14804745 ~ 14813651 (-)
AMCG00006047 NA coding upstream 66501 14850781 ~ 14851879 (-)
AMCG00006046 NA coding upstream 67877 14852157 ~ 14860735 (-)
AMCG00006044 NA coding upstream 82429 14866709 ~ 14875721 (-)
AMCG00006032 NA coding upstream 104860 14889140 ~ 14907158 (-)
G155783 NA non-coding downstream 212670 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 290577 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 357760 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 412324 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 459392 14318979 ~ 14323114 (-)
G155899 NA non-coding upstream 196104 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 316029 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 394771 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 420589 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 423240 15207520 ~ 15318177 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 99526 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 272892 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 440903 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 610899 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 1083972 13664064 ~ 13698534 (-)
AMCG00006102 slc5a5 other upstream 214220 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 649152 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1169796 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1670004 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1721084 16505364 ~ 16521689 (-)

Expression


Co-expression Network