AMCG00006044


Basic Information

Item Value
gene id AMCG00006044
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14866709 ~ 14875721 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006044
gtgtgtgtttgttatggGCTGAGGAGGCCaggtttaatgtttaaactGCTTTTCCTCTTTCAGCTCCCTGCGATAAGGCCCCTGAGTCACCTGAAGAGGCAGCCCAGGCCTGCTGTGCGAGAGAAGCCATTTTAACACAGCCCCTCTCCTGCCAGATTACAGTCCACAACCAATTCTCCAGAGCTCCCAGAACTCCAACAGCAAGttctaGTTCTTGCATGCTGAGAAACACAAAGCCCATTTCCGTACAGTTGAAGGAGGTTGATGGATGGTCATTTTCAAAGCATATCTCCACTTCAGTATGGATTGCTCTTGAGCTGTGAATATCTAGACATCTGACTTTCCAAATCCTGTATCAAGAGTAACTCAATCATAGTATGACCTCTGTAGATGAGCCCTATTATCCCAAGACCAGGTTTGAGAAAAGGAGACCAGTCCATGACCCAGTGGAAGATCTGGATGCCACTTTGGCCCCACGAATACAGATTCTACCCTCCAGGCTTTCCGAACGCTCTCCCTTGAGGGTTCAGGATTATGATGACAATGACGACTCTAGCGAGGGACCCCCTCTCCCCAGCACGCCGCCCGTCGGGGAAGTAGACAATGCAGCTAATCAGAAGGAAAATAATCCGTCCAAGAAGAGAACGCTCATACCCAAAGCATGGGGCAACTTCTTCAAGAAATGGAAGAAGGGTGACGGGTTCCAGCAGGATTCATTGGAAGAGAAATTCCTTCCTAATGGTTCCCAGGTCAGCCCACCCATAAGCCCACTCCTGGGCCCGCGATTCGGGGAGCAAGAGGACTCGTGGATGTCCAGCAAGATCTCGCAGAAGCCGCCCCTTACAGACAGCACCGGCACTTACTCCAATCAGGATATGCCGTACCAGGACCCTTTCACAGGGTCAGACAGGACGAGCATCCATCCGGCAGAGTACTACGCAGAGAAATTGGAAGTCTACAACCAGAAATACTCTTACATGAAATCCTGGCCAGGGCTCCTCAGGCTGCTGGCCGGCCTGCAGCTCCTCTTCGGGGGGATGGTGCTCGCCTGCGTGTGTGCCTACATCCAGAAAGACAATGAGTGGTACAACTTTAGTGGCTTCCAAACACCCAGCTACGGGTATGGTTATGGCGGTGGGTATAATTACTATGGACCCATGACCCCCTTTGTGCTGGCTGTTGTTGGCCTGGCCTGGTTGGTGACTGTTATCCTGCTAGTTCTGGGCTTGACAATGTACTATAGGACCATCCTCTTGGACTCCCACTGGTGGCCCCTGACTGAAGCGGTTATCAACCTGGTCCTGTTCCTGCTATACCTGGCAGGGGGGGTTGTGTACCTCAATGACCTGAACCGTGGAGGGCTGTGTTACATGACTGTGGGCATCAACCCCATGCTGTCCACCCTGTGCCGAGTGGATGGGGGCCAGATGGCCGGCACGGCCTTCATCTTCATCAACATGCTGACGTACCTGGTCAGCTTCCTGGTCTGTCTGAAGATGTGGAGGCACGAGGCGAACCGCATGGAGATGGAGGCTTTGGAAAGTGAGCCTCCCCATTCTGCCAGCACAGTCCAGACGAAAACCAAGAAGATTGTGTTTGAGGACAAGATCAACCACTCCATACGGACCACCAAGCGGATTCACTTCTCCGAGCCTGGTGACAACCCTGCCACCCTCAACAAAGCCATCCCTCCTGGATACGTCCCCAAACCCCGGGTCGTCCCTGACTACATCATgAAATACCCTGAGATCCGCTCTTCCGAGGACAGGGATAAGTACAAGGCTGTCTTTAATGACCAGTATCCAGAATACAAAGAGCTGTACAGTGAGATCCACGTGACTGTAAAGAAGTTCGCAGAACTGGACGCCATGTTGGGCAAGGTGCTCAGTGACACAGAAAACCCTGAGGAACACCAGCGAATCCAAAACGTGCTGAGGAAGTACAAGGCCAAGAAGAATGATCCCGCATTCCTGGAGAAGAAAGAACGCTGTGACTATCTGAAGGCCAAGCTGAACCACATCAAGGCCAGGATCCAGGAGTTTGACCGGAAGACTATGGGAGGCCGGCCCTGAAAAGCTTTTCTATTGAATTGACATGGCAGACCTATTGACAGCCTTCCGTACTGACTTCCCTCCATCTACGGGTGTTGATCAGATACTATGCTCTGGGTGAACTGTTCTCTGTCCTTTCCTGGGGAGGTCCAAACAAGTCTATCTTAAAGGCTTTTTTAAGAGTTTCcaaccaacacaaacacatatgaaCAAAGCCAGTAAGATTTCTTATCCAAAGATGCAGAGCTCTGGATCTAAAGCCAGAGAGTGACATTTTAAGGTTTAGATCCAACCCATATAATTTGATTCAGGTCCAAGGCAGTGGGAGATGTCTTACTTAGACACTGATGTTTTACTGCAGATACTATAGGCTGTGTAATCtctatattttatacataattacatcTGTACATGTAGCtcttttataaaacatattcatTGTTTTGACTGGTTTTAGAAGGTAGTAATAAAACTGACCAAAATAAGTACTTGGGACCAATAGGTGGcgttttctgtatgttttttatgcGTGTCAATGCTTGTTCTATGCAGAGAATTGTAACCACGTGCTGAAAATATGTGATTTGTGTGTAAAGTTTTGTACATGCTTACTGCAACATGTTTTAAGGAGGCTGAAGAAGTGAGATAAAAGGGGAGGCTGTAAACTTCTTGATCATGCTGCCGAAATAGTCAATCTGTTCCTCCTAAAAGTTGCAGAAGTcgattcatttatttgtttaagtcAGTGCTAGTAAAATCAAATCATGCTGGGCTTTTTGGGACTTCAAACTGTCCTCTGACAAAGATtgtattgaaatgaataaaaaagtGCAATCGTAGTTTTAGTTTTGGTGGTTATCAGGTCAACACAATGTCCAGTTTGGATTTAATTGCTGGGGCATTCATTTATCCCATCTCATCTAACATCAGGAGGCCTAGAAAGATGGATTCTGTAGGGAAAGATAATTGaccaattaagtcattaattaGTAGGATTAGGTACTGACGAACTCAGGGTGGAACAAAAACCTACAGCAAGTGACAAATATCATTCCAGGGAAATTGTGaatcttaaaatgaaatatatttagcatttcatcttatatataaataaagtttaaaatagGTCAAATAGTAACATTCATCTACTTCAAAAAATTAAGGTAGGAGATCTGAAGAGACTGAGGAGGTGATTTTCTTTAAGCTTTTTTCACGGTACTGATGTAGCGAAAGACAACACAAATGTagaaaaaattatatttcaccACATATGTAAACTGGTGTTCACAAAAAGTGGACCtggtactgcactgcacaatcaAATACAACTGCTCTTTGCTCtggaacacattttattttcatgctcTATGAAAACACAGACCTAATTATTAtatgtgtgaatatatttgtAACTGTGTTCATATTTTCTATATCTATTAAACATTGTTGATACAATCCTAACGTTGACGAAACCATTTGTTTGAGTTTCGTAGTTTCTAATCCTTATTCGTAACTGTGGAGCAGATAGTAACATGAAGCATATCTCCACAACTTCACTCCTTCAACCTTCACGGGCCTTGAAACATTCGACGTCTTCCGTTTAAGTGTGCATCTGAACAATGCCTCCATTCCCAACTGTGtatcctgttttcttttcacttccCTACAACCACAATAGGCCTCTTTAGAAATCCAAGATGAAGTCActtaagaattgtatttatttattttttatcaagcTTCTGGTTTGTCCACTATTGGATTAATCCGTTCTTTTccaaaaatgcttttgttgttggtctttttttatatactgg

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006044 True 3868 mRNA 0.45 6 14866709 14875721

Neighbor

gene id symbol gene type direction distance location
AMCG00006046 NA coding downstream 5974 14852157 ~ 14860735 (-)
AMCG00006047 NA coding downstream 14830 14850781 ~ 14851879 (-)
AMCG00006045 LOC107575641 coding downstream 53058 14804745 ~ 14813651 (-)
AMCG00006058 dda1 coding downstream 88624 14765995 ~ 14778085 (-)
AMCG00006057 NA coding downstream 148139 14705551 ~ 14718570 (-)
AMCG00006032 NA coding upstream 13419 14889140 ~ 14907158 (-)
AMCG00006033 LOC107589798,LOC107718068,LOC107722564,LOC107585128 coding upstream 44682 14920403 ~ 14931385 (-)
AMCG00006096 NA coding upstream 106080 14981801 ~ 14992261 (-)
AMCG00006103 NA coding upstream 155266 15030987 ~ 15031803 (-)
AMCG00006095 NA coding upstream 166462 15042183 ~ 15044491 (-)
G155783 NA non-coding downstream 296873 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 374780 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 441963 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 496527 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 543595 14318979 ~ 14323114 (-)
G155899 NA non-coding upstream 104663 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 224588 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 303330 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 329148 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 331799 15207520 ~ 15318177 (-)
AMCG00006043 NA other downstream 82429 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 183729 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 357095 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 525106 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 695102 14159131 ~ 14171607 (-)
AMCG00006102 slc5a5 other upstream 122779 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 557711 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1078355 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1578563 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1629643 16505364 ~ 16521689 (-)

Expression


Co-expression Network