AMCG00006045 (LOC107575641)


Basic Information

Item Value
gene id AMCG00006045
gene name LOC107575641
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14804745 ~ 14813651 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006045
ATGGCGAAAGTGGAGGCCCTGCTGATACAGAGGGCGAACCCCAACCTGGTGCTGAGCAAGGGGGCAGCGGCCGTCCATCTGGCTGCAGGAAAGGAGACGGAGAAACGGATCCGCTGCCTCAGACTCCTCCTGCAGTATGGCGCTGACCCCAATGTCAGATCTGTGGATGGCCTGACCCCATTGCACATCGCTGCCCTGTGGGGCTGTTACCAGAACCTCAAACTTCTTCTGCAGAATGGGGGAGACGCCAACCTCGAAGACCAGGACGGGAATAAGGCAGCTGATTTGGCAGACGAGCAGGAAAATCGCAAGTGTgcccagctcctgcaggaataCCAGAGTTACGGTCTTGACTGTCCTGAGGGGCCACTCAGCAGCACACGGAGGTCCTCGCAACACTCCGCCTATTTGAACCTGTCGGCAATCAGTGCCAGGCCCAGCGTGGGAGGGCGGTGCCGACGGTTGGGGCAGTCTGACCTTTCTGATCTCGCCTGGCGTCACACCCAGACCTGGAGGAGGGATTCGGAAGGGGGCGGGGAGCCTCAGTCGGTGTTGTCCAGCACTCGGATTTCAACAGCTGGCGGAATCGGGGTTCTGCCGGTGCTGCAAGAGGACCTTCCCCTTTCCAACTGCTCGTTTCATCCTAAACCCTTGGAGCTGTCGTCTCTCCCCAGTAACCCCGAGCCAGTGGATTCTGTCTGCTCTTCTCGCCGTGCCAGCCGAAAGAGTGTGAGCTTCAAGGAGGGTCATGAATACTTCCCTGCTACCAGCGCCGAGTCTCACTCGCAGCCTCCAACTGAGGAGAGTTCTCCCGCAGCGGATGAGACGTTTGACATCTCGGAATACTCTGAATTCTTGGACTTGGAACGCATGGCTACCGTCTTGAACTTCCAGGGCATCGACGTGACGTCCCCTGATCACGTCTTTGTGTTTTCGCGGGATTCTGGCTCTGTCAGTCCCGACCTGGACAAGACTCTGGTGGGACACTGGCCCATAGAAGAAGAGGAAGCAGATGAGGAACCAGAAGAGATTGACACTCCTGTTCAGCCACCACCTTGTAGTTccagcagcagcggcagcagtGGCAGCAGGTATAGCAGCTGTGACAGTGAACCTTACACGATTCCCCAGCAGGACCGCATCGGAGCTGACGTGCTGGAGAGCATGGAGGAGAGCCTTGCAGATACTGTCCTAGTGGACCCAATCCACAATGAGACAGACAGCTGTCTAAGTGCTGACGAGGAGCTGGCCAGGCAGATCCTGCTCTCTTCGAAGCTTCAGTCCACAAGCAGAGCATCGGAGGAAGAAGAGCAGCCACTGATGCTAAGCCCCTTCGTAACAGGCAGAACCAGATCCCGTCTGAGTCGCTGTTCTCTGAGAGCAAACGGCAGTTCCATCCTCTCGTCTCCCTCCTTCCTCTTTGATGAGACTCTACCCACACCCACACGCCTCCGCCGCCGCACCACTAAGAAGCATGGTGATGAGAGGCTGAATTCAGATGGCCTTGGATCGTCTTTGAGCAGTGAGTTTGAGAGCAGCGGTCAAACCCAAACTTCTTTGCTTGAAGGAAATTCGATTATGGAAGGGGGTGGCAGTCAGGATGACACTGTCCTGATCCCTGGGAGCCTTGCCGACACTGTGATCctggagagagaagaaagcagTGAAGATGGCATCACAGACTGCCTGGCAAAAGGGGTCGCCCATGCAGTGCTGGGAGACTATGGTGGCTTCGTTACTGATGACCTATCCAGTTCAGGTGGGGAAGGGGCAAAGTTGAGACTGAATGTAGGTCAGTGTCCACCTGGGGCGCCCAGAACGGGAGAATCCTGGGTAAGCGATGACCTCGAGTCCAGTGATCCCCAATCTGAGGGCAAGGTGGTTGTGGAGGGTTTGGCAAAGGGGCAGATGCCAGATTCCTGTTCCAGTGATGACTCCCCAGAGTCTCAGAGGGATCTGCCCGCAACGCCAGGCGCTGGGTATACCCCGAGGTACAGCGTCAGCCGGCTGTCTGCCTGCCATCAGCCCCAGAGACTGGCCGATCTCTCCTACACTCCAGGCGGGCGCCCCCTCATCCCGGAAGTTGAGGAGCCGGTGGAGTACCTCTACACTGACACGGAGGAGGGTCACGAACTGATCGAGTGCCACGTGCCACCCACAGCCAATCACACCCTCTCCTCTGACGTGACCTCGAGTGAGGACACTGTGCTTTATGACTGGAAGTCCTTCCATGCCAGCCCAGGCAAGGGAAAGGAGAACCAGCTGCCTCAAGAGGAAGTCCCATCTGCCATACACAAGCTGCCCGACAGGGAGCTCCGACGCCAGCTGCAGGAGCTTGGGGAGGAACCAGGCCCAATCAACAAGACAACCAGGCTGATTTACATGCAGCAGCTTTGTCGTCTGCAGCACAAGCAACCGAAACACAACCCAGGATACAGTCCTGAGCTGGCCGCCAGCATGCACACCTTCCAGCTGCCCGACTGCCGAGCACACGAGTTAGCCCTGTGCCAGCAGTTTGACCAGCCGGACCAGAACCGGAAGTGGCGAGAGGGCGTGATCAAGTCCAGCTTCAACTACTTGCTGCTCGACCCCAGGGTGACGACAAACCTCCCATCCCGCAGCGTGTCGATGCACCCCGCCGAGTGCTTCCAGACCTTCATCAAGGCCATCTTCTATGTGGGCAAGGGCAAGCGCTCCCGGCCTTACAGCCACCTGTACGAAGCTCTGGAGTACTACAGAGGAGACAGGACTTCCAAGAAGCTGTGCTCCAAGGTGCAGCACATCCTGCAGGTGTGGGCCACTGGCCAGGGCGTGATCTCTCTGCACTGCTTCCAGAACGTCATCCCAGTGGAGGCCTACACCCGCGAGGCTTGCATGGTGGATGCCATGGGGCTGAAGATGCTGACCAATAAGAAGCGAGGAGACTACTACGGGGTAGTAGCGACCTGGCCAATGAAACAGAGGCGTGAGCTGGGGGTGCACCTGCTGTACCGCGCCATGCTGATCTTTCTGGCTGAGGGGGAGAGGCAACTGCGTCCGGCGGACCTCCGAGCTGCCTAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107575641, partial

GO: NA

KEGG:

id description
K21411 ANKLE1, LEM3; ankyrin repeat and LEM domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006045 True 3060 mRNA 0.58 10 14804745 14813651

Neighbor

gene id symbol gene type direction distance location
AMCG00006058 dda1 coding downstream 26660 14765995 ~ 14778085 (-)
AMCG00006057 NA coding downstream 86175 14705551 ~ 14718570 (-)
AMCG00006038 NA coding downstream 134390 14663558 ~ 14670355 (-)
AMCG00006036 NA coding downstream 142236 14660585 ~ 14662509 (-)
AMCG00006039 nduab,ndufa11,LOC106613708 coding downstream 152992 14647589 ~ 14651753 (-)
AMCG00006047 NA coding upstream 37130 14850781 ~ 14851879 (-)
AMCG00006046 NA coding upstream 38506 14852157 ~ 14860735 (-)
AMCG00006044 NA coding upstream 53058 14866709 ~ 14875721 (-)
AMCG00006032 NA coding upstream 75489 14889140 ~ 14907158 (-)
AMCG00006033 LOC107589798,LOC107718068,LOC107722564,LOC107585128 coding upstream 106752 14920403 ~ 14931385 (-)
G155783 NA non-coding downstream 234909 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 312816 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 379999 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 434563 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 481631 14318979 ~ 14323114 (-)
G155899 NA non-coding upstream 166733 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 286658 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 365400 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 391218 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 393869 15207520 ~ 15318177 (-)
AMCG00006043 NA other downstream 20465 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 121765 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 295131 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 463142 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 633138 14159131 ~ 14171607 (-)
AMCG00006102 slc5a5 other upstream 184849 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 619781 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1140425 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1640633 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1691713 16505364 ~ 16521689 (-)

Expression


Co-expression Network