AMCG00006057


Basic Information

Item Value
gene id AMCG00006057
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14705551 ~ 14718570 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006057
CAAAGTAAGCGTGTGTGTAGCGAAGGAGAGGTCTATGGAAGGGGTCGAAATGCGTTATAATTGCATAAAGCGTAACCGTATTATTTTGCAGCAAATAGTTTATGCATGAAATCGGCAACTAAAGAACCAACTATACAGATTTCCTTGTAAATCGCTTGACTTGACTTCTTACAATGGAAACTTAATTCCGGAAAAACATTTGACAGTTTACTTATATTTTAGACACAGGAATACATAAAATCAACATAATTAcgtttttaaaacagaaataagctTATGATGACGTAtgatgttgaaaataatattcgGAGCGCTTGGGAGACCTTCCCAGTCCTATATTCCCATGGGTTTAAGAACCTTTTTGCTGAAGCATCCGAGCAGGACGCTGTCTGATGCCGACACCATCTTCGCCCTGTCCTCCGGCCACGGGAGGTGTGGGGTGGCCGTGGTACGGGTCAGTGGCCCCTGCTCGGCCCTCGCTCTCTGCAGCCTGGCCGGCCTGAAGCACGGCCCCCCGGCCCCCAGGATCGCTGTCCTTCGTAGCATCACCGACCCGCGCTCTCAAGAGCTGCTCGACAGGGGGCTTGTCCTCTGGTTCCCAGgtCCTCACAGCTTCACCGGTGAAGACAGCGCAGAGTTTCACATCCACGGGGGTCCGGCTGTCCTCACTGGGGTCTTGCAAGCCCTTGGCAGCCTGCCGGGCCTGCGTCCTGCTGAAGCCGGGGAGTTTACCAGACGTGCTTTCCATGCGGGCAAACTGGACCTGACTGAGGTGGAGGGGCTGGGGGACCTGATCCATGCTGAGACGGAGGCCCAGAGGAGGCAGGCGCTCAGGCAGATGGCAGGAGACCTGGGGCGGCTGTACCACACCTGGAGCAAAACGCTCATGAGGAATGTGGCTCACGTCGAAGCTTTCATCGACTTCAGCGAGGATGAGATGATAGAAGATGGCGTTTTGAATGAAGTGGACAGCTCGGTCTCGCGGCTCCAGTCTGACATCGAGGGACACCTGAGGGATGGACGCCGGGGAGAGAGACTGCGCAGCGGGGTTCACGTGGTCATCGCCGGGGAGACGAACGCCGGAAAGAGCAGCCTTCTCAACACCCTGTGTCAGAGGCCGGCAGCCATCGTGTCCCCCGTGGCTGGGACGACCCGGGACGTGGTGGAGACGTCGCTGGACATTGGGGGGTTCCCGGTCTTACTGAGCGACACAGCTGGCTTGAGAGAGGCCCGAGACAGCGTGGAGAAAGAGGGGGTCCGACGGGCCAGAGAGAGGGTGGAGCAGGCAGACCTGACGCTGGTAGTGCTGGACGTGAGCGAGCTTCCCCAGGACCAGAAGAAGGCCCACCCTTTCCTCACCAGCTACCTGAGAGTTGTGCTCGGCCACGGCGAGGACCCGGGGGCCGACCCTAGACGCTGCCTGCTGGTCCTCAACAAAACAGACCTGCTGACAGGAGAGCAGGTGGACAGTTTGCAAGGGGTCCTCAGTCAGAGTTCGGGACTGCCCCCCATCTGCCTGCTATCCTGCCAAACGGGGGATGGTTTGGAAGGCTTCCTGGAGGTCCTGCAGAAGGACGTAAAAACCATGTGTGGAGACCCTCTGGCCGGCGCTCCCAGTCTGACCCAGGCCCGGCACCGCTCTCACCTACAGCAGTGTGTCCAGGCCCTGGCACAATACCACCAGTACAGGGAATTGGACCTGGCGCTGGCGGCACAGGGACTCCGGCTGGCACTCACCAGCCTGGGAAGGATCACCGGCAGGGTGGGCGCGGAGGAGATCCTGGACATCGTCTTCAGGGATTTCTGCATCGGCAAATAGGCTGCCAGGGCCGAGGGCGGGCTTACGCACTTCATAGAGGTGCAGTTGGCACTCACCAGACTGGACCACTACGGCTGTAGGTCCGCAGAACTTCTACTCCAGTTTCTCAGCCCATTGAACGGAGGTTGGCTTTGGTGAAACAGTCTTGACCTCCAAACAAAGAGAGCACTCATTTTTTTTGTGCAGGGAGGGTATTGTCCTCCCAGATGTGCAGGAAAGGGCATCGGAGTGACCTCAGGCCCCTTTGTTTCCCTGTCAATCCGGCCTTGATTAAATATTCCTGCTTCCTTGAACCTATCCCCCTTTCTCAAGTTGTTTCTCACCCCCCCCAGCAGCCCAGCTCTTCACATTCTCCTCAAATCTTCCTCCAATTCTTCGCGATGACGTCATTGTTTGATCTCCTGGTTGATTAATTGGCCGACTGTGGCGAGAGGATTCGACAGACAGCAGCTGCTGTTTTCACCAGCCTCTGAGTCCTGAGCAACGTCGTGGAAGAactttgttgttattattcataCAAAGAGGTTTCATTTATTATCACCATGGCTCCCAACATCAGCCATTTCCCTATAGTTATTTaagttaaagagaaaaaaagttgtaGTTTGTCGCTTTCCAAGTCGTTCATTGATCAAGATCGATTAACAACATTTAAGAGCCCGAATATGAAACAGACAAATCAGACCCTGTTCCAATTAAGACCTTCACAACAATGCAAATATAGAGATTACAACAGAATATTAACAAGTTTCTCCGTTGTACAATCATCTGGATATATACAAATTATGGGACATAAAGAtgtttagtttattaatttaatatataattaatatatatttaaaacgaTGTTAATAACTGAATATACTCCATTAGTAGACCTTATTTGTGTTCTTTTCTCGCAAATGAACgttatttgaaagtatttttatatgtcTATCAAAAATTGACAAAAGGTGAATAAGTATGTGGGTTTACTCGATTATGATTCAGGATAAAGATTTATCTAGACACAGTGATATATACCTTAGATCAGTTGTTCTCAATCCTGTCTTGGAGAACCCccaaccctgctggtttttgttccaaccaagctctcaattatttaattgaacccttaatatGTGTGgcatatatttaaatggaaaagtgTCTCAATAAAGTGTATAATTTCAGCCGAATTCTACTCCATTCCCTTAGTTATGTAATTGGTTAATCGGCTTCAAGCATAACACAAAAGCCCGTCATAACAAGaactaaaaaagaaatatgaagCTAGGGGTTATCAGCTGTATATTCAAAGGAAGGTGATGGCTGGATGTGGTCTTTATTTTGGAAACACGGGTTTCAGACTTCAACACTGACCGCTAAGGGTGATTCCCATGGAGGCTCTCAGTACCAGGCTGGGGGCCCGGCGCGAGTGGCGTGCGTGggttgccttttgtttttgtttgcagtgCCCTCAGCCCTGGAAGGGGCAGTTGGCTCTCTGGTGGAGTTAAACAAAGGATATCCTGAGAACCGGAGCATAGAGACTCCTTCACCTGTCATTTATCAAGTGGCGCCCAACTCTTCATGGAAAATGTGAACGTTTGTTTACCTCCCCTCCCATCCTCAGAATCCTCTGGTTCTTTAGGAGATGAGGAATAAGTGTTTTCCCAACAGTTACTTAAACCTGCAACGCCACTGTGCGTACACTAGGAGTGACAATTACCATTGGGAGTGTTTTGAGTATGTGCTTGATGTAAGAGGGTTCCCATTGAGACAAAGAGATAAACAGATTAGATAAACATGCCACTGAAGTCTTCCGTAAACTGTCCTGCGTGGCCAGTGAGGAAAGAggcttttgtgttttcctcAACAACACGGCAGTTTACAACGGAAGACCTTGTAAGTAGAGCAGGTCTATTTTAATGCGGTTGTGCGCAATCGGGGGGTCAGATTAATGTTTGGATATGTCTCGTCACCGTCCAACtctttaaaattgtgtataCAGACACCTTGTTCGGAGCCTGTGTTGATGGGACATCCGTGTTCTCAATTGCATGGGAagtattgttttcttctgtaaacACCGGAGTTTGTGTACCTCCCTCCCATCCGTCTCTCTTGGCCCTCAGACAGATTCATATAaacattttgtactgattgGCTTGCGAGCAGTAAACTGTACCTTTCCTCTCAAAAACCACTAAGGTGTAGGAAACTGggatctgcaaataaataaaaaatcaatggGTCAAGGAGATGTTACTGTAGTGATTTTATCGGAGGCCTTCGAATCAAAGGGTTAAAGTGAAGATTGAAGACTACAGGACTGCAggacagtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgt

Function

GO: NA

KEGG:

id description
K03650 mnmE, trmE, MSS1; tRNA modification GTPase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006057 True 4180 mRNA 0.49 9 14705551 14718570

Neighbor

gene id symbol gene type direction distance location
AMCG00006038 NA coding downstream 35196 14663558 ~ 14670355 (-)
AMCG00006036 NA coding downstream 43042 14660585 ~ 14662509 (-)
AMCG00006039 nduab,ndufa11,LOC106613708 coding downstream 53798 14647589 ~ 14651753 (-)
AMCG00006035 NA coding downstream 112181 14589371 ~ 14593370 (-)
AMCG00006019 NA coding downstream 155864 14546944 ~ 14549687 (-)
AMCG00006058 dda1 coding upstream 47425 14765995 ~ 14778085 (-)
AMCG00006045 LOC107575641 coding upstream 86175 14804745 ~ 14813651 (-)
AMCG00006047 NA coding upstream 132211 14850781 ~ 14851879 (-)
AMCG00006046 NA coding upstream 133587 14852157 ~ 14860735 (-)
AMCG00006044 NA coding upstream 148139 14866709 ~ 14875721 (-)
G155783 NA non-coding downstream 135715 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 213622 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 280805 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 335369 14369761 ~ 14370182 (-)
G155703 tpm4,LOC107653617,LOC107757474 non-coding downstream 382437 14318979 ~ 14323114 (-)
G155899 NA non-coding upstream 261814 14980384 ~ 14981621 (-)
G155957 NA non-coding upstream 381739 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 460481 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 486299 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 488950 15207520 ~ 15318177 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 22571 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 195937 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 363948 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 533944 14159131 ~ 14171607 (-)
AMCG00005971 midn,LOC106573601,LOC105011665,LOC106613743 other downstream 1007017 13664064 ~ 13698534 (-)
AMCG00006043 NA other upstream 63936 14782506 ~ 14784280 (-)
AMCG00006102 slc5a5 other upstream 279930 14998500 ~ 15007979 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 714862 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 1235506 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1735714 16454284 ~ 16462165 (-)

Expression


Co-expression Network