AMCG00006064


Basic Information

Item Value
gene id AMCG00006064
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12746929 ~ 12759443 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006064
ATGGAGGCGCTGTTGGATCAGTGGCTATGGCGGCAGGAGTACTGGCTGCCCCCTGGCATCACCTGGAAGGACATGGAGGCGAGGGAGGGCACGCGCTACCCGCTGCCCCGTGACCTCTTCCTGACCCTGCCTCTGGCTCTGGGCTTCATCGCTCTGCGCTTGGTGCTAGTGGCGCTGCCTCTGAGCAGAGTGCTGGGAGTGCAGGACAAGGCCAGGGCTCAAGTGCCGCCCATCCCCGTGCTGGAGGCCTTTTTCATGCGGCGGAGTCAGCAGCCAGCGCAGAGTGATCTTGTCAGCCTGGCTAAGCAGTGCGACCTCACTCAGCGGCAGGTCGAAGTCTGGTTCCGTCGCCGGAGAAACCAGAACAGGCCCAGCAGCACCAAGAAGTTCTGTGAGGCCTGCTGGAGATTTGCCTTTTACCTCACTGCATTTGTGGCGGGCCTGGCTGTTCTGATCGATAAATCCTGGTTTTGGGACCAGAGGGAATGTTGGATTGGGTATCCTCAGCAACCCCTCCTGAATTGCCACTACTGGTACTACATGGCCGAGCTGGGATTCTACTGGTCTTTGCTCCTCTGCATCTCTGTGGATGTGAAACGCAAGGATTTCAAAGAGCAGATCGTCCACCACATCGCCACCATCTTCCTGATGGGCTTCTCGTACTGCGCCAACTATGTCCGTGTGGGTGCGCTGGTCATGCTGGTCCATGACTCCTCCGACTTTCTGCTGGAGtcagCCAAAATGTTCAACTACGCTGGCTGGAGGAAGACCTGCGACgccctgtttgtgtttttttctgtggtcttcctgGTCACCCGGCTCATGGTGTTCCCCAGCAAAGTGATCCACACCACCCTCTTCCTGTCCATGGAGATCTTCCAGCCCTTCTTTGGCTATTACTTCTTCAACATCCTCCTGATGGTCCTGCAAGCGCTGCACATCTTCTGGGCCTGGCTCATCCTGCGCATGGTCTACAAGTTCATCTTCCTGGGCAAGGTGGAGCGAGACGAGCGCAGTGACGAGGAGGAGAGCGACTGCGCTGACGAAGGGGAGGATCAGGGGTCCGTGGGAGAACCTCAGTGGGAGAAGCGGAAGGACGTGCTCAACTCCCGGCTGACCGCACTGGCCAACAACTGTGTCCTGAacaacctgaccaatcagaggAGCAGCCCTGCCAGCAGGATGCCCAAAGCCAGATAGCACTGGCGCCCTCAAGTGGTGGGAAGTCAGAATgctttaaggaaataaaaaggggaTTTAtccatttcaattattattattacttaaccTATTAATATGTAGCCAAGAGGTGGTCAAATCATAATTTCAAAGCTAATATTTCCTTTTActgatataaaaataagtttcttTAAGTTGTGATGACAGCAAGATGTTAAAAGCAGGTGTTTTTGCCGCAGCACATCTCTAGGGTTGTATAAAGGAGAATCAAAAGGGAATCCTTGCTAAATATTTGTCTACATTTTCCCACcacaaacattttactttataaaaGCACCATTTTCGTGTTTTAGTGGATATCTCTTACGGTTCTCAGTTTAGTGAAAAGTATGTGAAATTGAAAAGGCTCTATATGATGACAGCGTGGACACAGCCAGGTCTGCGAGAGTCTAAAGCAGTGCTTTCGTTAAATTGCATCCTTCAATCACAATGTAAGAATATTCTATGCAGTCAAAATATGTCGACCAAATCtctaacaatgttttaaattataatttcttatttttaataatctatATATGCAAAATTAGCATAAGAAAAACTCAAGGCAGAACATGAGACAATTCAGTTGGAAAGTGAATTATTGTTGCACAGGTTGCAGTGCATTGTGCAGAACGTAAATGTTTCCCCAACTTTACAgcctttttaatgaaaatattggACCAAACAAAAGtagaattacacaaaataaacacgaTACGATACTATTACAATGACAATCCTGCTTTTTCCAGCTCATCTAGATCTCTGGCCTTCATTATAAAATTTTTAATAGCAGGTCAATTAATAATGTAGGAATTGTATAAATTATTGAAAGTATTGCAGTGCAAATCCATTTCCAGGATAAATGAAGTTCAGTGACGAATGCCAAAAAAGAATGACAATGGTAGCTTAgtgccttttcattttaattggacATTTAACACCTATTCTTTGCCTCGATGATTATTATAAGCAAAAACCTCAGAATCTAACAGGCCAGGTTACAAACAATTGTATctagttttttacttttttataacCATTTAGAAAGTGGCATTTCAATTGATTTCTGAAACAAAAGTCATGCCACTGTACCTCAGCATTCAATGTAATTTAGTAATCATTATTCTGTGATCTTGCCTCAAGGTTGAGAGAGCTATTCCTGTATTAACTGCAGCTTAGAAGAGGGACAGTTTTGTTGGACCTACATTCTCCTCAAATGCACATATTGAACAATatgtttaaaagcaaataaatggcCTACTTGTATTCTTATGGGTTGTTTCATTGGCTAATACAAgacctgtggtgtatatagtgcTTCCAGTAGGTATAGGATTTATTCATGACCTAGTTAGGAAATCTACCTTTTtccaattataaataaatatataatttatttaaattggagtacattcatgttttttagcATCTGTACCCATCGATTAACTATAATTGTATAAGCTTTTGGATTCAGTTctttaattggtatttgtaCTATGGTTTATTCATGATACACTGGGTACCAGCTTTAGGAAAGCCAGTCCTTGTATTTCCCCTAGTGGAGATTCACCTGTGTGCGGCTGATGAAACACGGGTGCAAGATCAGAGCTCCCCCTAGTGGGAAGTCTAGGGAATTGTAATTGTGAGCTGTAAAGATGGATGGCGATTTTGCagacttttcattattttgagattttgtttGCAGTAGTGAATTGTGGGTAAACATGCCCTCCGTCTGAGATTTCAACCTCCATTTTCAGGAAAGAGTTGCAGTGCTGTGTGAGCTTTGCAGGCAAATGGGGAATCTAATCTCACAGCAAACCTGCTCTGGAAGAGAACAcactaattttacatttaaaaaaaaggtaaatgaaaATTCAAACGTAGATGGTTATTCCTGGtattattacattgtttgttttgggaatgtattttctttattttgtatgtttgtttgtttgttgggaTAGACTCAAATTCTATTAATTTGCCTTGTCAGTATGTTCTAAATTAGCAATTGTAAAGGCGGGGTCAGGATTTGACCCTACTATCAGTGATGCATGGCATCAGCCAAGCATGGGTAGGGGGGGGGAATGATTGGCTCCCACTCCCTGTCTGCTGCTGGGGATCTTATGCAACCCAGAAGCAGAATATTTACGGAAGTGAATTATTCGATTTTATTGCACAGAGCTACATATGTATTTGGAGACTGAATGACTGTGTTAGAGTCAGGTTTGTGCTGATGATGTCACTGGATTTCAACCCTATTTCTTCAGTGGATCTTTGAGACTTGTGCCTGTTTATATGGGTagacaaaaatctaaaaactccacggaataaatattttttcattcatcttACTTTTACATGAGAGTGGGGTGATGCACagaactaaaaataattattatttagtagaaataaaccatttctatagcttttaaatttcactaaaataactaaaaatggCTAGATTTTTCCCCCATTAGTATTAAGACTGATAAAAGCATGGTCCTGACAATAGCACACGATTAGTCTACCTGTCTGCTGTGTAGCTGTGTCCAGTGTACACAGTCGAAAGCATGGATAACACATTCTGTTTATGCTTATTTCCtcattattatgaataaatacattttatgtttgttttgttttctgtggtgtTGTTATTTCGTGGGCAATATAACCGGCAAAAAACGTTTTTTTCGTTACAATCCCATGATAACTGTGTCCTTCAGTCCCTCTTATGTTCCGAATGGCTGGGCTTTTAAGAGCAGGTGacagtttgtctgtttttttttttcgcatatactcagcaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006064 True 4045 mRNA 0.42 10 12746929 12759443

Neighbor

gene id symbol gene type direction distance location
AMCG00005990 sppl2b,sppl2 coding downstream 11022 12726847 ~ 12735907 (-)
AMCG00005991 NA coding downstream 24180 12717578 ~ 12722749 (-)
AMCG00005988 NA coding downstream 81823 12662352 ~ 12665106 (-)
AMCG00005923 LOC103464111,LOC103138520,LOC102237431,LOC107100952,LOC103373679,LOC105900972,LOC100702697 coding downstream 104738 12628716 ~ 12642191 (-)
AMCG00005916 NA coding downstream 336736 12365732 ~ 12410193 (-)
AMCG00005937 timm44,LOC108441293,LOC107660209,LOC107561596,LOC106954366 coding upstream 113468 12872911 ~ 12880597 (-)
AMCG00005938 hnrnpm,LOC105900966 coding upstream 122342 12881785 ~ 12890475 (-)
AMCG00005967 polr2e,LOC107599482,LOC107669821 coding upstream 262918 13022361 ~ 13025617 (-)
AMCG00005948 NA coding upstream 409634 13169077 ~ 13171020 (-)
AMCG00005947 NA coding upstream 413443 13172886 ~ 13181536 (-)
G155284 NA non-coding downstream 213 12746423 ~ 12746716 (-)
G155235 NA non-coding downstream 135484 12605723 ~ 12611445 (-)
G155183 NA non-coding downstream 299210 12447520 ~ 12447719 (-)
G155073 NA non-coding downstream 620801 12125161 ~ 12126128 (-)
G155058 NA non-coding downstream 723257 12003140 ~ 12023672 (-)
G155326 NA non-coding upstream 131664 12891107 ~ 12891358 (-)
G155331 NA non-coding upstream 149251 12908694 ~ 12910923 (-)
G155390 gpx4,gpx4b,gpx4a,LOC107723219 non-coding upstream 268761 13028204 ~ 13033408 (-)
G155391 NA non-coding upstream 320042 13079485 ~ 13107493 (-)
G155400 NA non-coding upstream 348369 13107812 ~ 13108067 (-)
AMCG00005992 NA other downstream 35793 12678405 ~ 12711136 (-)
AMCG00005989 NA other downstream 70935 12669256 ~ 12675994 (-)
AMCG00005875 NA other downstream 1370391 11374475 ~ 11376538 (-)
AMCG00005879 dot1l,LOC106920479 other downstream 1386055 11349245 ~ 11360874 (-)
AMCG00005877 sf3a2 other downstream 1407794 11336595 ~ 11339135 (-)
AMCG00006063 ctxn1,LOC108441290,LOC106573568 other upstream 84322 12843765 ~ 12854803 (-)
AMCG00005936 march2 other upstream 137111 12896554 ~ 12971406 (-)
AMCG00005939 LOC100697221 other upstream 160680 12920123 ~ 12949967 (-)
AMCG00005966 sbno2,LOC106573581 other upstream 276981 13036424 ~ 13051719 (-)
AMCG00005946 ncan,ncanb,LOC107687726,LOC107554802,LOC107599474,LOC107719650,LOC106613725 other upstream 364114 13123557 ~ 13156318 (-)

Expression


Co-expression Network